Protein Alignment bcd and Gsx2

DIOPT Version :10

• Sequence 1: NP_788587.1
• Gene: bcd / 40830
• FlyBaseID: FBgn0000166
• Length: 494
• Species: Drosophila melanogaster
• Sequence 2: NP_001131035.2
• Gene: Gsx2 / 364140
• RGDID: 1308047
• Length: 305
• Species: Rattus norvegicus
• Alignment Length: 213
• Identity: 60/213 - (28%)
• Similarity: 79/213 - (37%)
• Gaps: 65/213 - (30%)

  Fly    14 PLPHTHTHPHPH--------SHPHPHSH-PHPHHQHPQLQLP----------------------P 47
            ||..:...|.|.        ||.|.|.| |..||.|.|.|.|                      |
  Rat   103 PLLKSQFSPGPGDAQFCPRVSHAHHHHHAPQHHHHHHQPQQPGSAAAAAAAAAAAAAAAAALGHP 167

  Fly    48 QFRNPFDLLFDERTGAINYNYIRP--YLPNQMPKPDVFPSEELPDSLVMRRPRRTRTTFTSSQIA 110
            |...|.       ..|..||...|  :....|...|   :.::|:.      :|.||.|||:|:.
  Rat   168 QHHAPV-------CAATTYNVSDPRRFHCLTMGGSD---TSQVPNG------KRMRTAFTSTQLL 216

  Fly   111 ELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHK----------------IQSDQH 159
            |||:.|....||:..|..:::..|.|...||||||:|||.:||                :.|..|
  Rat   217 ELEREFSSNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKEGKGASRNNHASCKCVGSQAH 281

  Fly   160 KDQSYEGMPLSPGMKQSD 177
            ..:|.:...|||.....|
  Rat   282 YARSEDEDSLSPASANED 299

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
bcd	NP_788587.1	Homeodomain	106..153	CDD:459649	20/46 (43%)
Gsx2	NP_001131035.2	Homeodomain	204..260	CDD:459649	26/55 (47%)