DRSC/TRiP Functional Genomics Resources

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Protein Alignment bcd and HOXA3

DIOPT Version :10

Sequence 1:NP_788587.1 Gene:bcd / 40830 FlyBaseID:FBgn0000166 Length:494 Species:Drosophila melanogaster
Sequence 2:NP_109377.1 Gene:HOXA3 / 3200 HGNCID:5104 Length:443 Species:Homo sapiens


Alignment Length:374 Identity:86/374 - (22%)
Similarity:117/374 - (31%) Gaps:146/374 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 AQPPPDQNFYHHPLPHTHTHPHPHSHPHPHSHPHPHHQHPQLQLPPQFRNPFDLLFDERTGAINY 66
            :|||.......||.|.....|.|..   |...|.|....|....||...:|.....:..|.|   
Human    80 SQPPSLGEPPLHPPPPQAAPPAPQP---PQPAPQPPAPTPAAPPPPSSASPPQNASNNPTPA--- 138

  Fly    67 NYIR-PYLPNQMPKPDVFP--------------SEELPDSLV-------MRRPRRTRTTFTSSQI 109
            |..: |.|.:......:||              |....:|..       ....:|.||.:||:|:
Human   139 NAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCAGDKSPPGQASSKRARTAYTSAQL 203

  Fly   110 AELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQHKDQSYEGM------- 167
            .|||:.|...|||..||..:::..|.|...|:||||:|||.::|      |||..:||       
Human   204 VELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYK------KDQKGKGMLTSSGGQ 262

  Fly   168 -----PLSPGM-----------------KQSD-----------GDPPSLQTLSL----------- 188
                 |:.||.                 .||.           |.||:....||           
Human   263 SPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSPPPFSKPPQGTYGLPPASYPASLPSCAPPPPPQK 327

  Fly   189 -------GGGATPN-----------------ALTPSP-----------TPSTPTAHMTEHYSESF 218
                   |.|.||:                 .:..||           :.|.|......|...:.
Human   328 RYTAAGAGAGGTPDYDPHAHGLQGNGSYGTPHIQGSPVFVGGSYVEPMSNSGPALFGLTHLPHAA 392

  Fly   219 NAYYNYNG------GHNHAQANRHMHMQYPSGGGPGPGS-----TNVNG 256
            :...:|.|      ||:|               |||||.     |::.|
Human   393 SGAMDYGGAGPLGSGHHH---------------GPGPGEPHPTYTDLTG 426

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bcdNP_788587.1 Homeodomain 106..153 CDD:459649 21/46 (46%)
HOXA3NP_109377.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 75..147 19/72 (26%)
Antp-type hexapeptide 155..160 2/4 (50%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 159..196 3/36 (8%)
Homeodomain 192..248 CDD:459649 26/61 (43%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 247..338 17/96 (18%)
DUF4074 377..441 CDD:463833 15/65 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 400..443 11/42 (26%)

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