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Protein Alignment bcd and hoxd3a

DIOPT Version :10

Sequence 1:	NP_788587.1	Gene:	bcd / 40830	FlyBaseID:	FBgn0000166	Length:	494	Species:	Drosophila melanogaster
Sequence 2:	NP_571200.1	Gene:	hoxd3a / 30349	ZFINID:	ZDB-GENE-990415-120	Length:	396	Species:	Danio rerio

Alignment Length:	249	Identity:	71/249 - (28%)
Similarity:	98/249 - (39%)	Gaps:	40/249 - (16%)

- Green bases have known domain annotations that are detailed below.

  Fly    98 RRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQHKDQ 162
            :|.||.:||:|:.|||:.|...|||..||..:::..|.|...|:||||:|||.::|      |||
Zfish   162 KRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYK------KDQ 220

  Fly   163 SYEGMPLSPGMKQSDGDPPSLQTLSLG-GGATPNALTPS-PTPSTPTAHMTEHYSESFNAYYNYN 225
            ..:|:..||.....|..||...:..:| .|..||..:.| ..||.|:....:.......||....
Zfish   221 KSKGIMHSPLGHSPDRSPPLSGSNHIGYSGQLPNVNSLSYDAPSPPSFAKPQQNIYGLAAYTAPL 285

  Fly   226 GGHNHAQANRHMHMQYPSGGGPGPGS-TNVN--------GGQFFQQQQVHNHQQQLHHQGNHVPH 281
            || ...|..|:...:|......|.|| .|.|        ||.|............|    .|:||
Zfish   286 GG-CIPQQKRYPGTEYDHHSMQGNGSFANANLQSSPVYVGGNFVDSMPASGPMFNL----GHLPH 345

  Fly   282 QMQQQQQQAQQQQ----YHHFDFQQKQASACRVLVKDEPEADYNFNSSYYMRSG 331
            ........:...|    :||        ..|      :|...|...||::...|
Zfish   346 PSSASVDYSCAAQIPGNHHH--------GPC------DPHPTYTDLSSHHASQG 385

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.