DRSC/TRiP Functional Genomics Resources

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Protein Alignment bcd and Hoxa3

DIOPT Version :10

Sequence 1:NP_788587.1 Gene:bcd / 40830 FlyBaseID:FBgn0000166 Length:494 Species:Drosophila melanogaster
Sequence 2:NP_034582.1 Gene:Hoxa3 / 15400 MGIID:96175 Length:443 Species:Mus musculus


Alignment Length:379 Identity:80/379 - (21%)
Similarity:107/379 - (28%) Gaps:174/379 - (45%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 AQPPPDQNFYHHPLPHTHTHPHPHSHPHPHSHPHPHHQHPQLQLPPQFRNPFDLLFDERTGAINY 66
            :|||   .....|||.......|.:...|...|.|....|....||...:|              
Mouse    81 SQPP---GLGEPPLPPPPPQAAPPAPQPPQPPPQPPAPTPAAPPPPSSVSP-------------- 128

  Fly    67 NYIRPYLPNQMPKP----------------DVFP-----------------------SEELPDSL 92
                |...|..|.|                .:||                       .::.|.. 
Mouse   129 ----PQSANSNPTPASTAKSPLLNSPTVGKQIFPWMKESRQNTKQKTSGSSSGESCAGDKSPPG- 188

  Fly    93 VMRRPRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSD 157
             ....:|.||.:||:|:.|||:.|...|||..||..:::..|.|...|:||||:|||.::|    
Mouse   189 -QASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYK---- 248

  Fly   158 QHKDQSYEGM------------PLSPG--------------MKQSDGDPPSLQTLSLGGGATPNA 196
              |||..:||            |:.||              :......||.......|....|.|
Mouse   249 --KDQKGKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSPPPFSKPPQGAYGLPPA 311

  Fly   197 LTPSPTPS--------------------TP----------------TAHM--------------- 210
            ..|:|.||                    ||                |.|:               
Mouse   312 SYPAPLPSCAPPPPPQKRYTAAGSGAGGTPDYDPHAHGLQGNGSYGTPHLQGSPVFVGGSYVEPM 376

  Fly   211 --------TEHYSESFNAYYNYNG------GHNHAQANRHMHMQYPSGGGPGPG 250
                    ..|...:.:|..:|.|      ||:|               |||||
Mouse   377 SNSGPLFGLTHLPHTTSAAMDYGGTGPLGSGHHH---------------GPGPG 415

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bcdNP_788587.1 Homeodomain 106..153 CDD:459649 21/46 (46%)
Hoxa3NP_034582.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 74..151 18/90 (20%)
Antp-type hexapeptide 156..161 2/4 (50%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 163..197 2/35 (6%)
COG5576 <182..309 CDD:227863 38/134 (28%)
Homeodomain 193..249 CDD:459649 26/61 (43%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 248..354 20/111 (18%)
DUF4074 378..441 CDD:463833 12/53 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 401..443 8/30 (27%)

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