Protein Alignment bcd and hoxc3

DIOPT Version :10

• Sequence 1: NP_788587.1
• Gene: bcd / 40830
• FlyBaseID: FBgn0000166
• Length: 494
• Species: Drosophila melanogaster
• Sequence 2: XP_002936696.1
• Gene: hoxc3 / 100190990
• XenbaseID: XB-GENE-5997986
• Length: 394
• Species: Xenopus tropicalis
• Alignment Length: 370
• Identity: 86/370 - (23%)
• Similarity: 130/370 - (35%)
• Gaps: 114/370 - (30%)

  Fly     3 QPPPDQNFYHHPL---PHT----HTHPHPHS------HPHPHSHPHPHHQHPQLQLP-PQFRNPF 53
            |..|.::.|..|.   |.|    .:|...||      |....|......:.|....| |:..:..
 Frog    32 QDYPSEDDYQPPFCLPPDTANGSASHKGEHSIKGIDFHLSEVSEQAQQPKSPNSDSPLPKSASTQ 96

  Fly    54 DLLFDERTGAINYNYIRPYLPNQ---MPKPDVF------------------PSEELP---DSLVM 94
            .....:.||.::.:...|...::   ||| .:|                  |:::.|   .|.:.
 Frog    97 SCTSKKSTGPVSSDVTSPNKKSKGSNMPK-QIFPWMKETRQNSKQKKQAPPPADDAPAVDSSFLS 160

  Fly    95 RRPRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQH 159
            ...:|.||.:|:||:.|||:.|...|||..||..:::..|.|...|:||||:|||.:.|   ..|
 Frog   161 SASKRARTAYTNSQLVELEKEFHFNRYLCRPRRLEMAKLLNLSERQIKIWFQNRRMKFK---KDH 222

  Fly   160 KDQSYEGMPLSPGMKQSDGDPPSLQTLSLGGGATPNALTPSPTPSTPTAHMTEHYSESF----NA 220
            |.:                          |||.:|..|:||.:||...      ||.:.    :.
 Frog   223 KGK--------------------------GGGGSPGGLSPSSSPSLMP------YSGNLPLDGDC 255

  Fly   221 YYNY---NGGHNHAQANRHMHMQY--PSGGGP------GPGST-------NVNGGQFFQQQQVHN 267
            .|..   .|.:|.:..|.:....|  |...||      ||.|.       ::.|...:....:.|
 Frog   256 GYEVPMATGAYNKSPGNMYGLTAYSAPLFEGPSAQKRYGPQSLAPEYDPHSMQGDNNYDTSGLPN 320

  Fly   268 HQQQLHHQGNH------------VPHQMQQQQQ---QAQQQQYHH 297
            .|..|   ||:            :||...:...   .||....||
 Frog   321 GQGYL---GNYLENGSESCSMFSLPHPSSESMDYSCAAQTPSKHH 362

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
bcd	NP_788587.1	Homeodomain	106..153	CDD:459649	21/46 (46%)
hoxc3	XP_002936696.1	Homeodomain	164..220	CDD:459649	26/58 (45%)
		DUF4074	335..392	CDD:463833	6/28 (21%)