DRSC/TRiP Functional Genomics Resources

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Protein Alignment zen and hoxc13a

DIOPT Version :10

Sequence 1:NP_476793.1 Gene:zen / 40828 FlyBaseID:FBgn0004053 Length:353 Species:Drosophila melanogaster
Sequence 2:NP_571618.1 Gene:hoxc13a / 58059 ZFINID:ZDB-GENE-000822-4 Length:306 Species:Danio rerio


Alignment Length:165 Identity:48/165 - (29%)
Similarity:78/165 - (47%) Gaps:26/165 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 YYPVHQAKVGSYSADPSEVKYSDLIYGHHHDVNPIGLPPNYNQM----------NSNPTTLNDHC 61
            :||   :...||.|.|.   |.|:.......|:|   .|.::.:          .||......:|
Zfish   150 FYP---SLASSYQAVPG---YLDMSVVPSISVHP---EPRHDALIPMEGYQHWALSNGWDGQVYC 205

  Fly    62 SPQHVHQQHVSSD---ENLPSQPNHDSQRVKLKRSRTAFTSVQLVELENEFKSNMYLYRTRRIEI 123
            |.:.....|:...   :.:|.||...|.| :.::.|..:|.:||.|||.|:.::.::.:.:|..|
Zfish   206 SKEQTQSSHLWKSPFPDVVPLQPEVSSYR-RGRKKRVPYTKIQLKELEKEYAASKFITKDKRRRI 269

  Fly   124 AQRLSLCERQVKIWFQNRRMKFKKDIQGHREPKSN 158
            :...:|.||||.|||||||:|.||.:.   :.|:|
Zfish   270 SATTNLSERQVTIWFQNRRVKEKKFVS---KSKTN 301

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
zenNP_476793.1 Homeodomain 91..147 CDD:459649 23/55 (42%)
hoxc13aNP_571618.1 HoxA13_N 34..144 CDD:463521
Homeodomain 237..293 CDD:459649 23/55 (42%)
Blue background indicates that the domain is not in the aligned region.

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