DRSC/TRiP Functional Genomics Resources

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Protein Alignment zen2 and Lmx1a

DIOPT Version :10

Sequence 1:NP_476794.1 Gene:zen2 / 40827 FlyBaseID:FBgn0004054 Length:252 Species:Drosophila melanogaster
Sequence 2:NP_729801.1 Gene:Lmx1a / 39406 FlyBaseID:FBgn0052105 Length:640 Species:Drosophila melanogaster


Alignment Length:204 Identity:50/204 - (24%)
Similarity:76/204 - (37%) Gaps:47/204 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 KRSRTAFSSLQLIELEREFHLNKYLARTRRIEISQRLALTERQVKIWFQNRRMKLKK---STNRK 105
            ||.||..:|.|..:.:..|..:....|..|..:::...|:.|.|::||||:|.|:||   ...:.
  Fly   425 KRPRTILTSQQRKQFKASFDQSPKPCRKVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQN 489

  Fly   106 GAIGALTTSIPLSSQSSEDLQKDDQIVERLLRYANTNVETAPLRQVDHGVLEEGQITPPYQSYDY 170
            |..|..:.|...:..||....||           ..:.|...::|...|           .|..|
  Fly   490 GGSGGGSGSGRGTGNSSATDDKD-----------TNDKEDKCVKQELGG-----------DSSGY 532

  Fly   171 LHEFSPEPMALPQLPFNEFDANWASSWLGLEPTIPIAENVIEHNTQDQPMIQNFCWDSNSSSASS 235
            |               ...|:.:||.  .|.|.:|.:.:....|:.|     :||....|...|:
  Fly   533 L---------------GGLDSTFASQ--PLNPNLPFSPDDYPANSND-----SFCSSDLSLDGSN 575

  Fly   236 SDILDVDYD 244
            .|.||.|.|
  Fly   576 FDQLDDDAD 584

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
zen2NP_476794.1 Homeodomain 44..100 CDD:459649 18/55 (33%)
Lmx1aNP_729801.1 LIM1_Lmx1b 275..327 CDD:188757
LIM 333..388 CDD:413332
Homeodomain 425..481 CDD:459649 18/55 (33%)
Blue background indicates that the domain is not in the aligned region.

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