DRSC/TRiP Functional Genomics Resources

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Protein Alignment zen2 and Vsx2

DIOPT Version :10

Sequence 1:NP_476794.1 Gene:zen2 / 40827 FlyBaseID:FBgn0004054 Length:252 Species:Drosophila melanogaster
Sequence 2:NP_001284897.1 Gene:Vsx2 / 31469 FlyBaseID:FBgn0263512 Length:645 Species:Drosophila melanogaster


Alignment Length:219 Identity:51/219 - (23%)
Similarity:81/219 - (36%) Gaps:36/219 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 RSSEKSKRSRTAFSSLQLIELEREFHLNKYLARTRRIEISQRLALTERQVKIWFQNRRMKLKKST 102
            :..:|.:.|||.|:|.||.:||..|....|.....|..:|.:..|.|.::::||||||.|.:|:.
  Fly   225 KKKKKRRHSRTIFTSYQLEKLEEAFKEAHYPDVYAREMLSLKTELPEDRIQVWFQNRRAKWRKTE 289

  Fly   103 N---------RKGAIGALTT-SIPLSSQSSEDLQKDDQIVERLLRYA-----NTNVETAPLRQVD 152
            .         ..|..||:.. |:||.....:..:.:|.:...||...     ..::|.....:.|
  Fly   290 KVWGGSTIMAEYGLYGAMVRHSLPLPDTILKSAKDNDAVAPWLLGMEQKCMHRKSIEAQSALKDD 354

  Fly   153 HGV----------------LEEGQITPPYQSYDYLHEFSPEPMALPQLPFNEFDANWASSWLGL- 200
            .||                |...:......|.:.|:..||.|.:.|............|.:.|. 
  Fly   355 SGVSDHEDSAGSKSAHSEDLSRSRCHALSSSTESLNVVSPAPSSCPTSASTSAPPTSTSGYAGAA 419

  Fly   201 --EPTIPIAENVIEHNTQDQPMIQ 222
              ..|.|...:..  |:...|.|:
  Fly   420 SSAATTPTGASTT--NSSSSPHIE 441

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
zen2NP_476794.1 Homeodomain 44..100 CDD:459649 22/55 (40%)
Vsx2NP_001284897.1 Homeodomain 230..287 CDD:459649 22/56 (39%)
OAR 556..572 CDD:461067
Blue background indicates that the domain is not in the aligned region.

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