DRSC/TRiP Functional Genomics Resources

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Protein Alignment zen2 and Msx3

DIOPT Version :10

Sequence 1:NP_476794.1 Gene:zen2 / 40827 FlyBaseID:FBgn0004054 Length:252 Species:Drosophila melanogaster
Sequence 2:NP_446164.1 Gene:Msx3 / 114504 RGDID:620932 Length:204 Species:Rattus norvegicus


Alignment Length:98 Identity:40/98 - (40%)
Similarity:53/98 - (54%) Gaps:10/98 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 PTATTRSSEKSKRSRTAFSSLQLIELEREFHLNKYLARTRRIEISQRLALTERQVKIWFQNRRMK 97
            |..|.|..:.:::.||.|::.||:.|||:||..:||:...|.|.|..|:|||.||||||||||.|
  Rat    77 PPCTLRKHKTNRKPRTPFTTAQLLALERKFHQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAK 141

  Fly    98 LK----------KSTNRKGAIGALTTSIPLSSQ 120
            .|          |.|.:.....|.....||.:|
  Rat   142 AKRLQEAELEKLKLTAKPLLPAAFALPFPLGTQ 174

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
zen2NP_476794.1 Homeodomain 44..100 CDD:459649 31/65 (48%)
Msx3NP_446164.1 Homeodomain 88..144 CDD:459649 30/55 (55%)

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