DRSC/TRiP Functional Genomics Resources

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Protein Alignment zen2 and Hoxa4

DIOPT Version :10

Sequence 1:NP_476794.1 Gene:zen2 / 40827 FlyBaseID:FBgn0004054 Length:252 Species:Drosophila melanogaster
Sequence 2:NP_077326.1 Gene:Hoxa4 / 100912525 RGDID:2814 Length:285 Species:Rattus norvegicus


Alignment Length:81 Identity:42/81 - (51%)
Similarity:59/81 - (72%) Gaps:1/81 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 MMYPCVELNVEAAPTATTRSSEKSKRSRTAFSSLQLIELEREFHLNKYLARTRRIEISQRLALTE 84
            ::||.:: .:..:....:.:..:.||||||::..|::|||:|||.|:||.|.|||||:..|.|:|
  Rat   158 VVYPWMK-KIHVSAVNPSYNGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSE 221

  Fly    85 RQVKIWFQNRRMKLKK 100
            |||||||||||||.||
  Rat   222 RQVKIWFQNRRMKWKK 237

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
zen2NP_476794.1 Homeodomain 44..100 CDD:459649 38/55 (69%)
Hoxa4NP_077326.1 Homeodomain 181..237 CDD:459649 38/55 (69%)

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