Protein Alignment pb and nkx3.3

DIOPT Version :10

• Sequence 1: NP_476669.3
• Gene: pb / 40826
• FlyBaseID: FBgn0051481
• Length: 782
• Species: Drosophila melanogaster
• Sequence 2: NP_001013342.2
• Gene: nkx3.3 / 503746
• ZFINID: ZDB-GENE-050306-27
• Length: 240
• Species: Danio rerio
• Alignment Length: 186
• Identity: 53/186 - (28%)
• Similarity: 82/186 - (44%)
• Gaps: 35/186 - (18%)

  Fly   134 GVNVNVNVG-----VGVGYPVGVVPQTPDGMDSVPEYPWMKEKKTSRKSSNNNNQGDNSITEFVP 193
            |.:|.||.|     ..:...|.|:........|..|....::....|:..:..:|.......|..
Zfish    40 GSSVPVNRGAESAQTRISSCVLVLESLSSDQHSCEEESTGEDNSLERRHDHEMDQQKPQSCSFED 104

  Fly   194 EN--GLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQVKVWFQNRRMKHKRQ 256
            .|  ...:|.|.|:::.|:.|||:.|:..:||..|.|.::|.:|.|||.|||:||||||.|.||:
Zfish   105 SNPKSSKKRSRAAFSHAQVYELERRFNLQRYLSGPERADLAGALKLTETQVKIWFQNRRYKTKRR 169

  Fly   257 ------------TLSKTDDEDNKDSLK--GDDDQSDSNSNSKKSCQGCELPSDDIP 298
                        ||:|      :.::|  ..:||...|:.        :|||..:|
Zfish   170 QMAAELATTPTTTLAK------RVAVKVLVRNDQRQYNTE--------DLPSPSVP 211

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
pb	NP_476669.3	Homeodomain	199..255	CDD:459649	27/55 (49%)
nkx3.3	NP_001013342.2	Homeodomain	112..168	CDD:459649	27/55 (49%)