Protein Alignment pb and Gsx2

DIOPT Version :10

• Sequence 1: NP_476669.3
• Gene: pb / 40826
• FlyBaseID: FBgn0051481
• Length: 782
• Species: Drosophila melanogaster
• Sequence 2: NP_001131035.2
• Gene: Gsx2 / 364140
• RGDID: 1308047
• Length: 305
• Species: Rattus norvegicus
• Alignment Length: 277
• Identity: 79/277 - (28%)
• Similarity: 114/277 - (41%)
• Gaps: 74/277 - (26%)

  Fly    33 TSLPVGGCGGAGVVGGVGGVGVSVGQPGI-GQQGVPPVPSVLMVNKMTPNCDKRSADTAYWMTAS 96
            :|.|..|.||    |..|..|.:|...|: |..|..|    |:.::.:|.    ..|..:....|
  Rat    71 SSRPPAGAGG----GATGTAGAAVAGGGVAGGTGALP----LLKSQFSPG----PGDAQFCPRVS 123

  Fly    97 EGGFINSQPSMAEFLNHLSPESPKIGTPVGSGAIGGVGVNVNVNVGVGVGYPVGVVPQTPDGMDS 161
            .....:..|.  ...:|..|:.|      ||.|...............:|:|....|..
  Rat   124 HAHHHHHAPQ--HHHHHHQPQQP------GSAAAAAAAAAAAAAAAAALGHPQHHAPVC------ 174

  Fly   162 VPEYPWMKEKKTSRKSSNNNNQGD----------NSITEFVPENGLPRRLRTAYTNTQLLELEKE 216
                           ::...|..|          .|.|..|| ||  :|:|||:|:|||||||:|
  Rat   175 ---------------AATTYNVSDPRRFHCLTMGGSDTSQVP-NG--KRMRTAFTSTQLLELERE 221

  Fly   217 FHFNKYLCRPRRIEIAASLDLTERQVKVWFQNRRMKHKRQ-------------------TLSKTD 262
            |..|.||.|.||||||..|:|:|:|||:||||||:|||::                   ..::::
  Rat   222 FSSNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKEGKGASRNNHASCKCVGSQAHYARSE 286

  Fly   263 DEDNKDSLKGDDDQSDS 279
            |||:......::|:..|
  Rat   287 DEDSLSPASANEDKEIS 303

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
pb	NP_476669.3	Homeodomain	199..255	CDD:459649	38/55 (69%)
Gsx2	NP_001131035.2	Homeodomain	204..260	CDD:459649	38/55 (69%)