DRSC/TRiP Functional Genomics Resources

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Protein Alignment pb and Dbx1

DIOPT Version :10

Sequence 1:NP_476669.3 Gene:pb / 40826 FlyBaseID:FBgn0051481 Length:782 Species:Drosophila melanogaster
Sequence 2:NP_001009644.1 Gene:Dbx1 / 292934 RGDID:1308896 Length:335 Species:Rattus norvegicus


Alignment Length:188 Identity:56/188 - (29%)
Similarity:80/188 - (42%) Gaps:38/188 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   196 GLPRR---LRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQVKVWFQNRRMK----H 253
            |.|||   .|..:::.|...|||.|...||:.:|.|.::|:.|.|.:.|||:||||||||    .
  Rat   176 GKPRRGMLRRAVFSDVQRKALEKTFQKQKYISKPDRKKLASKLGLKDSQVKIWFQNRRMKWRNSK 240

  Fly   254 KRQTLSK--TDDEDNKDSLKGDDDQSDSNSNSKKSCQGCELPSDDIPDSTSNSRGHNNNTPSATN 316
            :|:.||.  ..::.....|....|.||         .|.:.|.|:..||...|..:  :.|    
  Rat   241 ERELLSSGGCREQTLPTKLNPHPDLSD---------VGQKGPGDEEEDSPGASLAY--HAP---- 290

  Fly   317 NNPSAGNLTPNSSLETGISSNLMGSTTVSASNVISADSSVASSVSLDEDIEESSPIKV 374
              |...:|         :...|..|...|:|....:|.|.:..   ||:.||...|.|
  Rat   291 --PDPRHL---------LEGPLPASPAHSSSPGKPSDFSDSDE---DEEGEEDEEITV 334

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pbNP_476669.3 Homeodomain 199..255 CDD:459649 26/62 (42%)
Dbx1NP_001009644.1 PRK12323 <49..182 CDD:481241 4/5 (80%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 56..102
Homeodomain 184..238 CDD:459649 24/53 (45%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 240..335 28/124 (23%)
Blue background indicates that the domain is not in the aligned region.

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