DRSC/TRiP Functional Genomics Resources

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Protein Alignment pb and GSX1

DIOPT Version :10

Sequence 1:NP_476669.3 Gene:pb / 40826 FlyBaseID:FBgn0051481 Length:782 Species:Drosophila melanogaster
Sequence 2:NP_663632.1 Gene:GSX1 / 219409 HGNCID:20374 Length:264 Species:Homo sapiens


Alignment Length:270 Identity:80/270 - (29%)
Similarity:118/270 - (43%) Gaps:67/270 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    64 QGVPP------VPSVLMVNKMTPN-CDKRSAD----TAYWMTASEGGFINSQPSMAEFLNHLSPE 117
            :|.||      ||....::.::|. |..|.|.    ....:|||:   ::..|. ...|..|...
Human    22 EGSPPPLFPYAVPPPHALHGLSPGACHARKAGLLCVCPLCVTASQ---LHGPPG-PPALPLLKAS 82

  Fly   118 SPKIGTPVGSGAIG--GVGVNVNVNVGVGVGYPVGVVPQTPDGMDSVPEYPWMKEKK---TSRKS 177
            .|..|:......:|  ...|:..|..|.........:.||        .||....::   .|..|
Human    83 FPPFGSQYCHAPLGRQHSAVSPGVAHGPAAAAAAAALYQT--------SYPLPDPRQFHCISVDS 139

  Fly   178 SNNNNQGDNSITEFVPENGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQV 242
            |:|.          :|.:   :|:|||:|:|||||||:||..|.||.|.||||||..|:|:|:||
Human   140 SSNQ----------LPSS---KRMRTAFTSTQLLELEREFASNMYLSRLRRIEIATYLNLSEKQV 191

  Fly   243 KVWFQNRRMKHKRQTLSKTDDEDNKDSLKGDDDQSDSNSNS---KKSCQGCELPS---------- 294
            |:||||||:|||::.             ||.:.:......:   ..:.|||:..|          
Human   192 KIWFQNRRVKHKKEG-------------KGSNHRGGGGGGAGGGGSAPQGCKCASLSSAKCSEDD 243

  Fly   295 DDIPDSTSNS 304
            |::|.|.|:|
Human   244 DELPMSPSSS 253

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pbNP_476669.3 Homeodomain 199..255 CDD:459649 38/55 (69%)
GSX1NP_663632.1 SNAG domain. /evidence=ECO:0000250 1..20
Homeodomain 148..204 CDD:459649 38/55 (69%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 201..264 14/66 (21%)
Blue background indicates that the domain is not in the aligned region.

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