DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG18048 and Trmt13

DIOPT Version :9

Sequence 1:NP_649646.3 Gene:CG18048 / 40782 FlyBaseID:FBgn0037435 Length:441 Species:Drosophila melanogaster
Sequence 2:NP_001029074.2 Gene:Trmt13 / 499697 RGDID:1565211 Length:495 Species:Rattus norvegicus


Alignment Length:487 Identity:156/487 - (32%)
Similarity:254/487 - (52%) Gaps:88/487 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 EKPVTTT----------CSYWVLRKKRRCKMTANKGSEFCGAHASSAATTATCDEKAREDSFQER 68
            |.|..||          |:|:|.:|||.|:|....|..|||.||.|          |.|::.::|
  Rat     2 EAPAPTTPAIGFPTDGRCNYFVEKKKRFCRMVVAAGKRFCGEHAGS----------AEEENARKR 56

  Fly    69 IPCPLDHKHTVFKRKLAKHLTICNARDQESSLPYIVKGVNSGDNLKETDEDLNKFNQIKLHELAD 133
            |.||||.||||::.:|||||..||:|::... .:.::.:|:|  ||:..|.|.:.  :.|..|::
  Rat    57 ILCPLDPKHTVYEDQLAKHLKKCNSREKPKP-DFFIQDINAG--LKDETEILEQL--VPLSSLSE 116

  Fly   134 EEFYSLIDKVKNLYDKHINSSIQELQLEHESLKEELSRKDYGQETLRQLTQTTSLLGILEHDHQL 198
            |:..:||.|::.. .:.:||:.::..:.|.:|.:.|:....|...::.|.|..|:||.:|....|
  Rat   117 EQLETLIKKLRKA-SEGLNSTHEDHIMSHPALHDALNDPRNGDCAVKHLKQQASILGNIEKLKLL 180

  Fly   199 MDHTSYIEFGAGKGQLAYFLATVLQEQKLSHSQVVLIDRMSLRHKKDNKLANR-EVVQRIRADIA 262
            .....::|||||||:|::::...|::.:..|  .:|:::::.|.|.|.|...: .|.:|::.||.
  Rat   181 GPRRCFVEFGAGKGKLSHWVDIALKDAENVH--FILVEKVTTRFKVDGKHRKKNSVFERLQIDIQ 243

  Fly   263 DLKLSALPELKKTQ-RTVAFSKHLCGAATDLTLRCI----------------------------- 297
            .|.|:.||.|::.: ..|...|||||.||||.|||:                             
  Rat   244 HLCLNRLPVLREGRLPVVGIGKHLCGVATDLALRCLVETYAASFKEKDEEPLAKRVKNDKTEKES 308

  Fly   298 --LGDGNASSDY---------VLIALCCHHRCSWRSYVGRKFLQEAGIGPREFVILTKMVSWAVC 351
              |....:..|.         ::|||||||||.||.|||:::.:..|:|..||....:|.|||.|
  Rat   309 NTLAKEGSEKDVPETRTPVAGIVIALCCHHRCDWRHYVGKEYFKALGLGAVEFYYFQRMSSWATC 373

  Fly   352 G-------TGLSRERRKAMESADFQ-------LTETNTQ----RLTRQEREQIGQQCKRVLDYGR 398
            |       :.::.||:.|.:..:.:       ||:.:|.    .||.:|:::||..||.::|.||
  Rat   374 GMRTSLEASDVTAERKDAQKDEEEEHDDVGDRLTDGSTDSLPGTLTVEEKKKIGHLCKLLIDQGR 438

  Fly   399 LEHLRSHGYQAELKFYVPRDVTLENVVLLARP 430
            |::|:..|:...|::|....|:||||:|.|.|
  Rat   439 LQYLQQKGFSPALQYYTDPLVSLENVLLTAVP 470

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18048NP_649646.3 zf-TRM13_CCCH 20..44 CDD:288558 11/33 (33%)
zf-U11-48K 69..92 CDD:283028 14/22 (64%)
TRM13 183..429 CDD:282990 96/305 (31%)
Trmt13NP_001029074.2 zf-TRM13_CCCH 17..45 CDD:403044 12/27 (44%)
zf-U11-48K 59..80 CDD:398771 13/20 (65%)
TRM13 165..469 CDD:398743 96/305 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166352276
Domainoid 1 1.000 151 1.000 Domainoid score I4264
eggNOG 1 0.900 - - E1_KOG2811
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H6875
Inparanoid 1 1.050 240 1.000 Inparanoid score I3267
OMA 1 1.010 - - QHG54880
OrthoDB 1 1.010 - - D364329at33208
OrthoFinder 1 1.000 - - FOG0005014
OrthoInspector 1 1.000 - - oto97267
orthoMCL 1 0.900 - - OOG6_103381
Panther 1 1.100 - - LDO PTHR12998
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X3545
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1514.810

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