DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gasp and cbd-1

DIOPT Version :10

Sequence 1:NP_649611.2 Gene:Gasp / 40745 FlyBaseID:FBgn0026077 Length:258 Species:Drosophila melanogaster
Sequence 2:NP_502145.2 Gene:cbd-1 / 178061 WormBaseID:WBGene00010351 Length:1319 Species:Caenorhabditis elegans


Alignment Length:216 Identity:52/216 - (24%)
Similarity:75/216 - (34%) Gaps:67/216 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 KYWKCDNGVSELKTCGNGLAF--------------------DATDSKYLTEN-----CDYLHNVD 77
            ||.:|..|.|:|:.|.....|                    :.:..||.|.|     ||      
 Worm  1125 KYLRCSYGASKLQQCSEDRVFSNDKLECIVRESVSACTVPKNPSIKKYYTSNDQSAFCD------ 1183

  Fly    78 CGDRTELEPPITTPHCSRLYGIFPDENKCDVFWNCWNGE----PSRYQCSPGLAYDRDARVCMWA 138
                            .:..|::.:|..|.....|:.||    ||   |...||:::....|.:.
 Worm  1184 ----------------GKEDGLYRNERDCSAILQCFGGELFEHPS---CQSSLAFNQLTGKCDYP 1229

  Fly   139 DQVPECKNEEVANGFSCPAAGELANAGSFSRHAHPEDCRKYYICLEGVAREYGCPIGTVFKIGDS 203
            .:|..|:|....|       ||.:..|||...|:  :|..:|.|:.|......||.||||    :
 Worm  1230 QKVSGCENHGQTN-------GECSEHGSFIADAN--NCEVFYRCVWGRKVVMTCPSGTVF----N 1281

  Fly   204 DGTGNCEDPEDVPGCEDYYGD 224
            .....|:.|..||.|.....|
 Worm  1282 PLLSVCDWPSAVPSCSGQASD 1302

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GaspNP_649611.2 ChtBD2 21..72 CDD:214696 13/58 (22%)
CBM_14 97..144 CDD:426342 13/50 (26%)
CBM_14 170..218 CDD:426342 15/47 (32%)
cbd-1NP_502145.2 ChtBD2 97..141 CDD:214696
ChtBD2 191..237 CDD:214696
CBM_14 692..743 CDD:426342
CBM_14 785..836 CDD:426342
CBM_14 1108..1161 CDD:426342 8/35 (23%)
CBM_14 1182..1235 CDD:426342 15/77 (19%)
CBM_14 1251..1296 CDD:426342 16/50 (32%)
Blue background indicates that the domain is not in the aligned region.

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