DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG2931 and Rbp4

DIOPT Version :10

Sequence 1:NP_649552.1 Gene:CG2931 / 40673 FlyBaseID:FBgn0037342 Length:302 Species:Drosophila melanogaster
Sequence 2:NP_476935.1 Gene:Rbp4 / 41668 FlyBaseID:FBgn0010258 Length:428 Species:Drosophila melanogaster


Alignment Length:105 Identity:22/105 - (20%)
Similarity:50/105 - (47%) Gaps:16/105 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   199 RIFCGDLGNDVNDEVLTRTFNKFPSFQRARVVRDKRTGKSKGFGFVSFREPADFIRAMKEMDGRY 263
            |||.|.|....::.::...|::|......:::.|:.||:.:.|||:.|.:|:...:|:..     
  Fly   137 RIFLGGLKEYHDENIVREYFSQFGPVASVKLLMDRETGRQRAFGFLEFVDPSSAEKALAP----- 196

  Fly   264 VGSRPIKLRKSTWRQRSLDVVKK--KEREKQVLLQAFNSM 301
                     :..|..::|..||:  ::.:::.....|:|:
  Fly   197 ---------RKHWILQTLVEVKRSTQKADRRFRFPIFSSV 227

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG2931NP_649552.1 RRM_RBM42 192..274 CDD:409817 16/74 (22%)
Rbp4NP_476935.1 RRM_SF 34..105 CDD:473069
RRM2_hnRNPA_like 137..209 CDD:409766 18/85 (21%)
Blue background indicates that the domain is not in the aligned region.

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