DRSC/TRiP Functional Genomics Resources

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Protein Alignment POLDIP2 and Fbxo3

DIOPT Version :10

Sequence 1:NP_730934.1 Gene:POLDIP2 / 40655 FlyBaseID:FBgn0037329 Length:431 Species:Drosophila melanogaster
Sequence 2:NP_001103076.1 Gene:Fbxo3 / 690634 RGDID:1593433 Length:480 Species:Rattus norvegicus


Alignment Length:165 Identity:51/165 - (30%)
Similarity:78/165 - (47%) Gaps:29/165 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   289 TTENVRITVIPFYMGCRETPASSV----YWWRYCIRLE----NLGELSVQLRERHWRIFSLSGTL 345
            ||.::.::|...::    ...|||    |::.|.||:|    .|.|.:.||..|:|||.:..|.:
  Rat   280 TTGDITVSVSTSFL----PELSSVHPPHYFFTYRIRIEMSRDALPEKACQLDSRYWRITNAKGDV 340

  Fly   346 ETVRGRGVVGQEPILSP-RLPAFQYSSHVSLQAPSGHMWG--TFRLEREDGYSFDCKIPPF---- 403
            |.|:|.||||:.||:|| |:  ::|:|..:....||:|.|  ||.........|:..||.|    
  Rat   341 EEVQGPGVVGEFPIISPGRI--YEYTSCTTFSTTSGYMEGYYTFHFLYFKDKVFNVAIPRFHMAC 403

  Fly   404 --------SLESKPDDLGTPTPATPSAHDKKRDDS 430
                    .||..||:............:::.|||
  Rat   404 PTFRVSIARLEMGPDEYEEMEEEAEEEEEEENDDS 438

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
POLDIP2NP_730934.1 YccV-like 72..258 CDD:445467
DUF525 289..407 CDD:470082 45/140 (32%)
Fbxo3NP_001103076.1 F-box_FBXO3 13..61 CDD:438856
SMI1 94..>190 CDD:443423
ApaG 283..404 CDD:442207 42/126 (33%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 419..464 3/20 (15%)
Blue background indicates that the domain is not in the aligned region.

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