DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG11999 and Pomt1

DIOPT Version :10

Sequence 1:NP_649527.1 Gene:CG11999 / 40637 FlyBaseID:FBgn0037312 Length:216 Species:Drosophila melanogaster
Sequence 2:NP_445858.1 Gene:Pomt1 / 84430 RGDID:620078 Length:747 Species:Rattus norvegicus


Alignment Length:190 Identity:53/190 - (27%)
Similarity:73/190 - (38%) Gaps:56/190 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 LHSHDVKY------GSGSG-QQSVTGVEQKEDVNSHWVIKAQTGELCERG----------EPIAC 91
            ||||...|      |.||. ||.||....| |:|:.|::|       :.|          .|:..
  Rat   341 LHSHKNTYPMIYENGRGSSHQQQVTCYPFK-DINNWWIVK-------DPGRHQLVVNNPPRPVRH 397

  Fly    92 GSTVRLEHLSTKKNLHSHHFSSPLS-GEQEVSAYGTDGLG---------------DTGDHWEVVC 140
            |..|:|.|..|.:.|::|..::||| ..||||.|....:.               ...|.|:.:.
  Rat   398 GDIVQLVHGMTTRLLNTHDVAAPLSPHSQEVSCYIDYNISMPAQNLWKLDIVNRESNQDTWKTIL 462

  Fly   141 SNENWMRSAHVRLRHIDTGMYLGMSGRSYGRPISG--QMEIVGVH---KPQHGTRWTTAE 195
            |        .||..|::|...|.:||...  |..|  |:|:||..   .|.....|...|
  Rat   463 S--------EVRFVHVNTSAILKLSGAHL--PDWGFRQLEVVGEKLSLGPHESMVWNVEE 512

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11999NP_649527.1 beta-trefoil_MIR_SDF2_meta 27..201 CDD:467764 53/190 (28%)
Pomt1NP_445858.1 PMT 42..289 CDD:396786
beta-trefoil_MIR_POMT1 321..515 CDD:467752 53/190 (28%)
PMT_4TMC 544..738 CDD:465056
Blue background indicates that the domain is not in the aligned region.

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