DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ubc6 and vih

DIOPT Version :10

Sequence 1:NP_524230.2 Gene:Ubc6 / 40610 FlyBaseID:FBgn0004436 Length:151 Species:Drosophila melanogaster
Sequence 2:NP_648582.1 Gene:vih / 44118 FlyBaseID:FBgn0264848 Length:178 Species:Drosophila melanogaster


Alignment Length:141 Identity:58/141 - (41%)
Similarity:85/141 - (60%) Gaps:1/141 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 RRLMRDFKRLQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVR 71
            :||.::...|......|:|..|...||..|...|.||.:|.:...|::|:::|...||...|.|:
  Fly    35 KRLHKELMNLMMANERGISAFPDGENIFKWVGTIAGPRNTVYSGQTYRLSLDFPNSYPYAAPVVK 99

  Fly    72 FVSKVFHPNVYADGGICLDILQNRWSPTYDVSAILTSIQSLLSDPNPNSPANSTAAQLYKENRRE 136
            |::..|||||...|.||||||:::||..|||..||.||||||.:||..||.|:.||.::.: ::|
  Fly   100 FLTSCFHPNVDLQGAICLDILKDKWSALYDVRTILLSIQSLLGEPNNESPLNAQAAMMWND-QKE 163

  Fly   137 YEKRVKACVEQ 147
            |:|.:.|..|:
  Fly   164 YKKYLDAFYEK 174

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ubc6NP_524230.2 UBCc_UBE2A_2B 3..145 CDD:467410 57/137 (42%)
vihNP_648582.1 UBCc_UBE2C 34..173 CDD:467411 57/138 (41%)

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