DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ten-m and shf

DIOPT Version :10

Sequence 1:NP_001262211.1 Gene:Ten-m / 40464 FlyBaseID:FBgn0004449 Length:3349 Species:Drosophila melanogaster
Sequence 2:NP_001284963.1 Gene:shf / 31617 FlyBaseID:FBgn0003390 Length:460 Species:Drosophila melanogaster


Alignment Length:365 Identity:82/365 - (22%)
Similarity:125/365 - (34%) Gaps:96/365 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   957 KLTKEIQPYSYWNMQFYQSEPAYVKFDYTIPRGASIGVYGRRNALPTHTQYHFKEVLSGFSASTR 1021
            ::|.:::..:.:|.....||..||.|.:.         .|||...     |.|..:.   :....
  Fly   149 RVTNDLRDTTLYNFLVIPSEVNYVNFTWK---------SGRRKYF-----YDFDRLQ---TMDES 196

  Fly  1022 TARAAHLSITREVTRYMEPGHWFVSLYNDDGDVQELTFYAAVAEDMTQNCPNGCSGNGQCLLG-- 1084
            ..:|..|||.:......|..::.:.|                      .|....||.....:|  
  Fly   197 ILKAPTLSIRKSGRIPQEQKNFSIFL----------------------PCTGNSSGTASFNVGLK 239

  Fly  1085 -HCQCNPGFGGDDCSESVCPVL------CSQHGEY----TNGECICNPGWKGKECSLRHDECEVA 1138
             ..:.|....|       .|:.      |:..|.|    :|...:........||||:       
  Fly   240 IQTRHNKPLSG-------TPIRLNFKKECAHRGVYDIDASNPTSLTTLQAPDPECSLK------- 290

  Fly  1139 DCSGHGHCVSGK-CQCMRGYKGKFCEEVDCPHPNCSGHGFC-ADGTCICKKGWKGPDCATMDQDA 1201
             |..:|:|.... |:|..||.|::||...| .|.|...|.| |...|.|.:|::|..|     :.
  Fly   291 -CGKNGYCNEHHICKCNVGYTGQYCETAFC-FPQCLNGGNCTAPSVCTCPEGYQGTQC-----EG 348

  Fly  1202 LQCLPDCSGHGTFDLDTQTCTCEAKWSGDDCSKELCDLDCGQHGRCEG-DACACDPEWGGEYC-- 1263
            ..|...|...|.. :....|.|...:.|..|....|.:.|...|||.| :.|.|.....|::|  
  Fly   349 GICKDKCLNGGKC-IQKDKCQCSKGYYGLRCEYSKCVIPCKNEGRCIGNNLCRCPNGLRGDHCEI 412

  Fly  1264 ---NTRLCDVRCNEHGQCKNGTCL------CVTGWNGKHC 1294
               ...:|        :|:||||:      |..|:.|:||
  Fly   413 GRKQRSIC--------KCRNGTCVSHKHCKCHPGFYGRHC 444

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ten-mNP_001262211.1 EGF_Tenascin 1071..1098 CDD:480934 6/29 (21%)
EGF_2 1139..1162 CDD:400365 8/23 (35%)
DUF5885 <1181..1229 CDD:437064 10/47 (21%)
EGF_2 1272..1294 CDD:400365 8/27 (30%)
acid_disulf_rpt 1337..1363 CDD:411265
NHL 1750..2065 CDD:302697
NHL repeat 1784..1830 CDD:271323
NHL repeat 1854..1888 CDD:271323
NHL repeat 1911..1950 CDD:271323
NHL repeat 1972..2005 CDD:271323
NHL repeat 2039..2065 CDD:271323
RHS_repeat 2183..2217 CDD:461685
RhsA <2248..2980 CDD:442442
Tox-GHH 3191..3268 CDD:464783
shfNP_001284963.1 WIF 120..258 CDD:470637 25/154 (16%)
Blue background indicates that the domain is not in the aligned region.

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