DRSC/TRiP Functional Genomics Resources

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Protein Alignment: Srpk79D and nmo

Sequence 1:NP_001246881.1 Gene:Srpk79D FlyBaseID:FBgn0025702 Length:1018 Species:Drosophila melanogaster
Sequence 2:NP_001356976.1 Gene:nmo FlyBaseID:FBgn0011817 Length:439 Species:Drosophila melanogaster

Alignment Length:177 Identity:50/178 (28%)
Similarity:77/178 (43%) Gaps:21/178 (12%)


  Fly   843 SLIDNSNVRVKIADLGNACYD----YHHFTEDIQTRQYRSIEVLLGA-PYNYTADIWSTACLAFE 902
            :|:.|||..:||.|.|.|..:    ..|.|:::.|:.||:.|:|:|| .|:...|:||..|:..|
  Fly   171 NLLVNSNCVLKICDFGLARVEEPDQAKHMTQEVVTQYYRAPEILMGARHYSSAVDVWSVGCIFGE 235

  Fly   903 LATGDYLFDPHAGESYSRDEDHLAHIVELLGSIPQSVIFRGKHGLKYFTSYGSLRNITKLKPWSL 967
            |.....||..      ......|..|.||||:.....:.....|.:..    .||...|...:|:
  Fly   236 LLGRRILFQA------QNPVQQLELITELLGTPTMEDMRHACEGARTH----MLRRAPKPPSFSV 290

  Fly   968 MNVLVEKYDWDPVEAKKFSDFLLPMLEYNPVIRASAAECLQHPWLEQ 1014
            :..|......:.|.      .|..||.::|..|.|..:.|.||:|::
  Fly   291 LYTLSSHATHEAVH------LLCQMLVFDPDKRISVTDALAHPYLDE 331

Known Domains:


GeneSequenceDomainRegion External IDIdentity
Srpk79DNP_001246881.1 STKc_SRPK 336..>504 CDD:271038
S_TKc 347..>492 CDD:214567
STKc_SRPK <844..1012 CDD:271038 49/173 (28%)
nmoNP_001356976.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 P PTHR24055
RoundUp 00.000 Not matched by this tool.
11.100

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