DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Act79B and Actrt3

DIOPT Version :10

Sequence 1:NP_524210.1 Gene:Act79B / 40444 FlyBaseID:FBgn0000045 Length:376 Species:Drosophila melanogaster
Sequence 2:NP_001102412.1 Gene:Actrt3 / 365763 RGDID:1561457 Length:371 Species:Rattus norvegicus


Alignment Length:368 Identity:171/368 - (46%)
Similarity:258/368 - (70%) Gaps:4/368 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDCYVGDEAQSKRGILSLKYPIE 73
            :|:||||||.|||.||...|:.|:|:|:||.::...... .:::..|||:||.:|..||:.||:|
  Rat     8 VVIDNGSGMIKAGLAGAREPQFVYPNILGRTKNHSPAAD-SKQELRVGDQAQERRSFLSISYPVE 71

  Fly    74 HGIITNWDDMEKVWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQ 138
            .|:|::|.|||.:|.|.:...|.:.|.:.|||:||..|||.|:|:.::::.||....||.|:::|
  Rat    72 RGLISSWGDMEIMWKHIYDYNLNLNPSDGPVLVTEPALNPLADRQHISEVFFENLGVPAFYMSVQ 136

  Fly   139 AVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTT 203
            |||:|:|:|.|||:||:||.|::..|||:|||.|.|.:.:|::||.|||:|||.:|.:.|.....
  Rat   137 AVLALFAAGFTTGLVLNSGAGITQCVPIFEGYCLSHGVKQLNVAGIDLTNYLMMLLKDDGIMLLR 201

  Fly   204 TAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRTPEALFQPSFL 268
            |.:|:.|.||||..||||:::::||   ...:::||.|.||||:.:.:..:.||.|||||.|..:
  Rat   202 TGDRKTVTDIKENACYVAMNYDEEM---VKESNVEKMYTLPDGKTVKLRKQVFRCPEALFSPYLV 263

  Fly   269 GMESCGIHETVYQSIMKCDVDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTIKIKIIAP 333
            .:::.||....:.||||||.|:|...::|.:||||:|.:||:..|:.|::..|||:...::::||
  Rat   264 NVDAPGIDRICFSSIMKCDADLRNSFFSNIILSGGSTSFPGLDKRLIKDVAKLAPANTTVQVVAP 328

  Fly   334 PERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 376
            ||||.|||:|||||||||.||.|||:..|::|.||.|||::||
  Rat   329 PERKISVWMGGSILASLSAFQDMWITAAEFEEVGPNIVHQRCF 371

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Act79BNP_524210.1 ASKHA_NBD_actin 7..371 CDD:466823 166/361 (46%)
Actrt3NP_001102412.1 ASKHA_NBD_actin_Arp-T1-3 6..362 CDD:466848 164/357 (46%)

Return to query results.
Submit another query.