Protein Alignment PolH and AT1G49980

DIOPT Version :10

• Sequence 1: NP_649371.2
• Gene: PolH / 40438
• FlyBaseID: FBgn0037141
• Length: 885
• Species: Drosophila melanogaster
• Sequence 2: NP_175420.3
• Gene: AT1G49980 / 841422
• AraportID: AT1G49980
• Length: 671
• Species: Arabidopsis thaliana
• Alignment Length: 771
• Identity: 176/771 - (22%)
• Similarity: 274/771 - (35%)
• Gaps: 248/771 - (32%)

  Fly    16 RVVLLVDMDCFFCQVEEKQHPEYRNRPLAVVQYNPWRGGG---IIAVNYAARAKGVTRHMRGDEA 77
            |:.|.||||.|:..||....|..:.:|:||        ||   |...||.||..||...|.|..|
plant   103 RIWLHVDMDAFYAAVETLSDPSIKGKPMAV--------GGLSMISTANYEARKFGVRAAMPGFIA 159

  Fly    78 KDLCPEIVLCQVPNIREKADTSKYRDAGKEVANVLQRFTQLLERASVDEAYLDITETVNHRMQQM 142
            :.|||:::...|       |.:||.........|.:.:.......|:|||||||||....|.
plant   160 RKLCPDLIFVPV-------DFTKYTHYSDLTRKVFRNYDPHFIAGSLDEAYLDITEVCRERG--- 214

  Fly   143 QSGAFALQPQELVNTFAVGYPSIGDYVNKITNRFANPYMDDERYQMSYDQNDLPAVRQSDIRLLI 207
                                                                           |.
plant   215 ---------------------------------------------------------------LS 216

  Fly   208 GASVAGEVRAAVKKETGYECSAGIAHNKILAKLAAGMNKPNKQTILPL-TETASLFDS-LPVGKI 270
            |..:|.|:|::|..|||..||||:|.|::|||:.:.:||||.|.:|.. ..|...|.| |||.||
plant   217 GGEIAEELRSSVYSETGLTCSAGVAANRLLAKVCSDINKPNGQFVLQNDRSTVMTFVSFLPVRKI 281

  Fly   271 KGLGGKFGEVVCETLGIKFMGQVVKFSEVDLQRKFDEKNGTWLFNISRGIDLEAVTPRFYS-KSI 334
            .|:|.....::.:.||||...::|:...: |...|.:.:..:..::..|:. ...||:..| |||
plant   282 GGIGKVTEHILKDALGIKTCEEMVQKGSL-LYALFSQSSADFFLSVGLGLG-GTNTPQVRSRKSI 344

  Fly   335 GCCKKFPGRNNITGLKTLQHWLGELSSEINDRLEKDFIENNRRAKHMVVQYVQDIDGEEVAS--- 396
            ...:.|..    ||.:.|   |.....|:.:.|..|..:....|:.:.::.       :.||
plant   345 SSERTFAA----TGDERL---LYSKLDELAEMLSHDMKKEGLTARTLTLKL-------KTASFEI 395

  Fly   397 -SRSTALRDYDQESIVRLSLDLIKANTKTFLRPGSESALNNAIKFLGISVGKFETVSSGQNKLQE 460
             ||:.:|:.|...|.     |::|..||..     ::.|..:::.:|:.:.:|         ::|
plant   396 RSRAVSLQRYTCSSD-----DILKHATKLL-----KAELPVSVRLIGLRMSQF---------VEE 441

  Fly   461 MFANQAAKKRRVSGDEPGQLPKVEMEKKQKQTDEFKMKSFFANYLQGAKKEDAKADGISANPLAA 525
            :         |.|....|.:.|..::|...:              |....:|..:..:.|
plant   442 I---------RNSDPSQGTITKFIVQKDSSR--------------QAQDLDDNDSFDLDA----- 478

  Fly   526 AAGAPNKNFVEEYKHKLHAAVRTEGTVLTSTPAEFKESFFSQYLKQQKKTGQQGSVTSREDSLDV 590
                 |||.:...:         .|.|          ||.|.             .||.....||
plant   479 -----NKNCLSNDE---------SGNV----------SFGSH-------------ETSSAHLKDV 506

  Fly   591 QELAE--ELDAIEADNSKDFEEDTEEETELTSDTHMSKPEGQSSDAGQEQDPNTLNDSTGNDLYV 653
            .|..|  ::|:.:...:::..:..|....|..|:.:.|.:
plant   507 VEYEERSQIDSGKVIPNQECMKKEERLQILEGDSLLKKYK------------------------- 546

  Fly   654 ETGIVPPTLTEDELKPSTSKRKFDEIESSVSNYKECYVEFAVPNLRTDILPTI---KCDQCGANI 715
                        |.||.||....|.     ||..|....|.    :|:.|..|   ||..||..:
plant   547 ------------ECKPDTSHSMNDN-----SNATEAVSVFP----QTEPLYWIDGYKCVLCGIEL 590

  Fly   716 PDE-VKSLQTHRDHHFAQELSR-----TLRSTEREERTQSRQKISLKPTPPKKSKK 765
            |.. |:..|.|.|.|.||.|..     :..:|..:.|...::|::.||...|..:|
plant   591 PPSFVEERQEHSDFHLAQRLQNEETGSSSSTTPSKRRILGKEKVNSKPKKQKPDQK 646

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
PolH	NP_649371.2	PolY_Pol_eta	20..447	CDD:176456	112/436 (26%)
		zf_UBZ	705..736	CDD:465769	14/34 (41%)
		zf_UBZ	805..832	CDD:465769
AT1G49980	NP_175420.3	PolY_Pol_IV_kappa	106..438	CDD:176459	113/438 (26%)
		zf_UBZ	579..613	CDD:465769	13/33 (39%)