DRSC/TRiP Functional Genomics Resources

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Protein Alignment CycH and Ccnl1

DIOPT Version :10

Sequence 1:NP_524207.1 Gene:CycH / 40429 FlyBaseID:FBgn0022936 Length:324 Species:Drosophila melanogaster
Sequence 2:NP_064321.2 Gene:Ccnl1 / 56706 MGIID:1922664 Length:532 Species:Mus musculus


Alignment Length:257 Identity:58/257 - (22%)
Similarity:108/257 - (42%) Gaps:56/257 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    75 MPKCVVGTAFHYFKRFYLNNSPMDYHPKEILA-TCVFVACKVEEFNVSINQFVN------NIKGD 132
            :|:..:.|....|.||:.:.|.:. |..||:| .|:.:|.|:||....|...:|      .::|.
Mouse   105 LPQVAMATGQVLFHRFFYSKSFVK-HSFEIVAMACINLASKIEEAPRRIRDVINVFHHLRQLRGK 168

  Fly   133 RNKATDI-----------VLSNELLLIGQLNYYLTIHNPFRPIEGFL---------IDIKTRSNM 177
            |..:..|           |:..|..::.:|.:.:.:.:|.:.|..:|         ..::|..|.
Mouse   169 RTPSPLILDQNYINTKNQVIKAERRVLKELGFCVHVKHPHKIIVMYLQVLECERNQTLVQTAWNY 233

  Fly   178 QNPDRLRPHIDSFIDSTYYSDACLLHTPSQIALAAVLHAASREQENLDSYV-TDLLFVSAREKLP 241
            .| |.||.::  |:          ...|..||.|.:..||...|..|.:.. ..|||.:..|::.
Mouse   234 MN-DSLRTNV--FV----------RFQPETIACACIYLAARALQIPLPTRPHWFLLFGTTEEEIQ 285

  Fly   242 GLIDAVRKIRIMVKQYQQPDREKVKAIEKKLDKCRNQANNPDSELYKERLRRLYTDEDDMPA 303
            .:  .:..:|:..:  ::|:.|   .:||:::| |..|      |.:.:|:....:.|..||
Mouse   286 EI--CIETLRLYTR--KKPNYE---LLEKEVEK-RKVA------LQEAKLKAKGLNLDGTPA 333

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CycHNP_524207.1 ccl1 2..307 CDD:129660 58/257 (23%)
Ccnl1NP_064321.2 CYCLIN_SF 46..201 CDD:477360 23/96 (24%)
Cyclin-like 1 94..196 22/91 (24%)
CYCLIN_SF 205..327 CDD:477360 32/148 (22%)
Cyclin-like 2 209..293 21/98 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 332..532 2/2 (100%)
RS 396..438
Blue background indicates that the domain is not in the aligned region.

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