DRSC/TRiP Functional Genomics Resources

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Protein Alignment CycH and ccnh

DIOPT Version :10

Sequence 1:NP_524207.1 Gene:CycH / 40429 FlyBaseID:FBgn0022936 Length:324 Species:Drosophila melanogaster
Sequence 2:NP_001428803.1 Gene:ccnh / 541325 ZFINID:ZDB-GENE-050320-13 Length:331 Species:Danio rerio


Alignment Length:323 Identity:134/323 - (41%)
Similarity:199/323 - (61%) Gaps:25/323 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MYPVSSQKRSWTFANEGQLMEFRVEQNSKYIESHEEEAQGR-DLNEH-FLTSAEERLLLKQYEIY 63
            ||..||||:.||:..|..|.:.|:|.|.|:..  :..:.|: .:||. .|...||::|.|.||..
Zfish    13 MYHNSSQKKFWTYDKEETLDKLRLEANQKFCS--KALSSGKPGINESTLLNEQEEKVLFKHYEKR 75

  Fly    64 LFDFCRRFEPTMPKCVVGTAFHYFKRFYLNNSPMDYHPKEILATCVFVACKVEEFNVSINQFVNN 128
            |.|||..|:|.|||.|||||..||:|||||||.|:|||:.|:.||.:::|||:|||||..|||.|
Zfish    76 LLDFCAVFKPVMPKSVVGTACMYFRRFYLNNSLMEYHPRTIMLTCAYLSCKVDEFNVSSTQFVGN 140

  Fly   129 IK---GDRNKATDIVLSNELLLIGQLNYYLTIHNPFRPIEGFLIDIKTR-SNMQNPDRLRPHIDS 189
            ::   ..:.:|.|.:|..|||||.|||::|.:|||:||:||||||:||| ..::||:.||...:.
Zfish   141 LQESPAGQERAVDQILEYELLLIQQLNFHLVVHNPYRPLEGFLIDLKTRYPLLENPEMLRKSAED 205

  Fly   190 FIDSTYYSDACLLHTPSQIALAAVLHAASREQENLDSYVTDLLFVSA-REKLPGLIDAVRKIRIM 253
            |::....:||.||.:||||||.|||::|:|....:|.|:.:.:.:.. :|.|..:.:::|::..:
Zfish   206 FLNRATMTDAGLLFSPSQIALTAVLNSAARAGLKMDVYLNECMGLKEDKETLSKMYESMRRMTSL 270

  Fly   254 VKQYQQPDREKVKAIEKKLDKC---------RNQANNPDSELYKERLRRLYTDE----DDMPA 303
            ||.|:.|..|:|...::||::.         |......|..:.|   |::..||    ||:.|
Zfish   271 VKAYELPKAEEVSICKQKLERIYAEFATNLKRKHGYEDDDHVVK---RQMVADEEWTDDDLDA 330

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CycHNP_524207.1 ccl1 2..307 CDD:129660 133/322 (41%)
ccnhNP_001428803.1 None

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