Protein Alignment CycH and koko

DIOPT Version :10

• Sequence 1: NP_524207.1
• Gene: CycH / 40429
• FlyBaseID: FBgn0022936
• Length: 324
• Species: Drosophila melanogaster
• Sequence 2: NP_732338.1
• Gene: koko / 14462485
• FlyBaseID: FBgn0264816
• Length: 259
• Species: Drosophila melanogaster
• Alignment Length: 241
• Identity: 48/241 - (19%)
• Similarity: 96/241 - (39%)
• Gaps: 49/241 - (20%)

  Fly    62 IYLFDFCR---RFEPTMPKCVVGTAFHYFKRFYLNNSPMDYHPKEILATCVFVACKV-EEFNVSI 122
            :|:|: |.   :.:|....| ....||   ||:......||....|.|..:::|.|: |:.:|.|
  Fly    38 MYIFE-CAAKLKMKPLTAAC-AAIVFH---RFFREVKASDYDEFLIAAGSLYLAGKIKEDESVKI 97

  Fly   123 NQFVN---------NIKGDRN----KATDIVLSNELLLIGQLNYYLTIHNPFRPIEGFLIDIK-- 172
            ...:|         |...|.|    ...|.::..|||:...|.:.|.|....:.:..::..::
  Fly    98 RDVINVAYCTLNRGNDPVDLNDEYWSMRDAIVQAELLITRTLCFDLNIDLAHKYLLHYMKTLQDW 162

  Fly   173 TRSNMQNPDRLRPHIDSFIDSTYYSDACLLHTPSQIALAAVLHAASREQENLDSY-----VTDLL 232
            ..:.:.|...:.....|::...::|...|.:.|:.:|:..:..|       |.:|     :||..
  Fly   163 VGTEVWNSVPIAKAAASYLQDFHHSANILKYKPTHVAIGCLSLA-------LQTYGIQVPLTDES 220

  Fly   233 FVSAREKLPGLIDAVRKIRIMVKQYQQPDREKVKAIEKKLDKCRNQ 278
            ..||....|           :||.:.:.::.::  ||..::..:|:
  Fly   221 DESAMWYKP-----------LVKDFTRENQWEI--IENVIEVYKNE 253

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CycH	NP_524207.1	ccl1	2..307	CDD:129660	48/241 (20%)
koko	NP_732338.1	CYCLIN_CCNM_CCNQ_rpt1	32..142	CDD:410237	27/108 (25%)
		CYCLIN_CCNM_CCNQ_rpt2	147..252	CDD:410238	18/124 (15%)