DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CycH and LOC1277948

DIOPT Version :10

Sequence 1:NP_524207.1 Gene:CycH / 40429 FlyBaseID:FBgn0022936 Length:324 Species:Drosophila melanogaster
Sequence 2:XP_317464.4 Gene:LOC1277948 / 1277948 VectorBaseID:AGAMI1_007873 Length:374 Species:Anopheles gambiae


Alignment Length:181 Identity:39/181 - (21%)
Similarity:79/181 - (43%) Gaps:37/181 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    80 VGTAFHYFKRFYLNNSPMDYHPKEILAT-CVFVACKVEEFNVSINQFVNNIK-----------GD 132
            |.|...||.|||:.:|...: |:.:.|: |:|:|.||||........:...:           ||
Mosquito    51 VATGVVYFHRFYMFHSFRTF-PRFVTASCCLFLAGKVEETPKKCKDIIKTARGLLSDEKFQSFGD 114

  Fly   133 RNKATDIVLSNELLLIGQLNYYLTIHNPFRPIEGFLIDIKTRSNMQNPDRLRPHID---SFIDST 194
            ..|  :.|::.|.:|:..:.:.|.:.:|:    .||:.. .:....:..:|:..:.   :|::.:
Mosquito   115 DPK--EEVMTLERILLQTIKFDLQVEHPY----SFLVKY-AKCLKGDSAKLQKMVQMAWNFVNDS 172

  Fly   195 YYSDACLLHTPSQIALAAVLHAA-----------SREQENL---DSYVTDL 231
            ..:...:...|..||:|.:..|:           .::.|:|   |.:|.|:
Mosquito   173 LSTTVSIQWEPEIIAVALIYLASKLSKFTVVEWVGKKPEHLKWWDMFVQDV 223

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CycHNP_524207.1 ccl1 2..307 CDD:129660 39/181 (22%)
LOC1277948XP_317464.4 CYCLIN_CCNK_rpt1 20..134 CDD:410233 23/85 (27%)
CYCLIN_CCNK_rpt2 138..239 CDD:410234 15/91 (16%)

Return to query results.
Submit another query.