DRSC/TRiP Functional Genomics Resources

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Protein Alignment eg and kni

DIOPT Version :10

Sequence 1:NP_524206.1 Gene:eg / 40428 FlyBaseID:FBgn0000560 Length:373 Species:Drosophila melanogaster
Sequence 2:NP_001287130.1 Gene:kni / 40287 FlyBaseID:FBgn0001320 Length:434 Species:Drosophila melanogaster


Alignment Length:423 Identity:151/423 - (35%)
Similarity:190/423 - (44%) Gaps:135/423 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MNQLCKVCGEPAAGFHFGAFTCEGCKSFFGRTYNNIAAIAGCKHNGDCVINKKNRTACKACRLRK 65
            |||.|||||||||||||||||||||||||||:||||:.|:.||:.|.|:|:|||||.||||||||
  Fly     6 MNQTCKVCGEPAAGFHFGAFTCEGCKSFFGRSYNNISTISECKNEGKCIIDKKNRTTCKACRLRK 70

  Fly    66 CLLVGMSKSGSRYGRRSNWFKIHCLLQEQQTTSG-------LGGGSSVGSGSGGGVSSASLEQLA 123
            |..|||||.|||||||||||||||||||.:..:.       |.||.||     ||..|||     
  Fly    71 CYNVGMSKGGSRYGRRSNWFKIHCLLQEHEQAAAAAGKAPPLAGGVSV-----GGAPSAS----- 125

  Fly   124 RLQQASNQARQTYQDKTNPCIKSATATTSPRIEGAAVGTGIGGGASPSF-LQAAKLHHQRQLKLD 187
                                        ||          :|...:|.| ..||.|||..|.:..
  Fly   126 ----------------------------SP----------VGSPHTPGFGDMAAHLHHHHQQQQQ 152

  Fly   188 SR--------LSNTPSDSGASSAGDPNEDGVTSVLGGQIATPSSTNATSLPKLDLRHPNFP---- 240
            .:        |...||.....||..|    ..|::||   .|.. :...||.    |..||    
  Fly   153 QQVPRHPHMPLLGYPSYLSDPSAALP----FFSMMGG---VPHQ-SPFQLPP----HLLFPGYHA 205

  Fly   241 -----ATSEPDADMQRQ--RHQELLEIFRSHSEPLYSSFAPFSHLPPVLLAAGVPQLPI------ 292
                 |.|..||..:::  :|::.::...|.:.     |:|.|..|.|...:...|.||      
  Fly   206 SAAAAAASAADAAYRQEMYKHRQSVDSVESQNR-----FSPASQPPVVQPTSSARQSPIDVCLEE 265

  Fly   293 -----FKDQFKAELLFP-----TTSSPELEEPIDLSFRSRADPASPMAHNSNSPSLSEPAAASHC 347
                 ...|..|.||.|     |.::|....|  |||.::....||:               |.|
  Fly   266 DVHSVHSHQSSASLLHPIAIRATPTTPTSSSP--LSFAAKMQSLSPV---------------SVC 313

  Fly   348 L--GESTNFV--------RKSTPLDLTLVRSQT 370
            .  ||:|:.|        .:..|:||::..|::
  Fly   314 SIGGETTSVVPVHPPTVSAQEGPMDLSMKTSRS 346

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
egNP_524206.1 NR_DBD_like 3..87 CDD:413390 68/83 (82%)
kniNP_001287130.1 NR_DBD_like 8..92 CDD:413390 68/83 (82%)

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