DRSC/TRiP Functional Genomics Resources

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Protein Alignment eg and Esr2

DIOPT Version :10

Sequence 1:NP_524206.1 Gene:eg / 40428 FlyBaseID:FBgn0000560 Length:373 Species:Drosophila melanogaster
Sequence 2:XP_006240283.1 Gene:Esr2 / 25149 RGDID:2582 Length:567 Species:Rattus norvegicus


Alignment Length:138 Identity:50/138 - (36%)
Similarity:69/138 - (50%) Gaps:38/138 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 CKVCGEPAAGFHFGAFTCEGCKSFFGRT---YNNIAAIAGCKHNGDCVINKKNRTACKACRLRKC 66
            |.||.:.|:|:|:|.::|||||:||.|:   :|:..    |.....|.|:|..|.:|:|||||||
  Rat   168 CAVCSDYASGYHYGVWSCEGCKAFFKRSIQGHNDYI----CPATNQCTIDKNRRKSCQACRLRKC 228

  Fly    67 LLVGMSKSGSRYGR---------RSNWFKIHCLLQEQQTTSGLGGGSSVGSGSGGG--------V 114
            ..|||.|.|||..|         ||:..::|||              |....:||.        :
  Rat   229 YEVGMVKCGSRRERCGYRIVRRQRSSSEQVHCL--------------SKAKRNGGHAPRVKELLL 279

  Fly   115 SSASLEQL 122
            |:.|.|||
  Rat   280 STLSPEQL 287

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
egNP_524206.1 NR_DBD_like 3..87 CDD:413390 39/93 (42%)
Esr2XP_006240283.1 ERbeta_N 35..144 CDD:463610
NR_DBD_ER 163..244 CDD:143545 37/79 (47%)
NR_LBD_ER 282..535 CDD:132747 4/6 (67%)
Blue background indicates that the domain is not in the aligned region.

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