DRSC/TRiP Functional Genomics Resources

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Protein Alignment eg and Nr3c1

DIOPT Version :10

Sequence 1:NP_524206.1 Gene:eg / 40428 FlyBaseID:FBgn0000560 Length:373 Species:Drosophila melanogaster
Sequence 2:XP_017456328.1 Gene:Nr3c1 / 24413 RGDID:2741 Length:795 Species:Rattus norvegicus


Alignment Length:201 Identity:57/201 - (28%)
Similarity:83/201 - (41%) Gaps:37/201 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 QLCKVCGEPAAGFHFGAFTCEGCKSFFGRTYNNIAAIAGCKHN------GDCVINKKNRTACKAC 61
            :||.||.:.|:|.|:|..||..||.||.|      |:.|.:||      .||:|:|..|..|.||
  Rat   437 KLCLVCSDEASGCHYGVLTCGSCKVFFKR------AVEGRQHNYLCAGRNDCIIDKIRRKNCPAC 495

  Fly    62 RLRKCLLVGMSKSGSRYGRRSNWFKIHCLLQEQQTTSGLGGGSSVGSGSGGGVSSASLEQL---- 122
            |.||||..||:....:..::....        ||.|:|:...:|  ......:..|:|.||    
  Rat   496 RYRKCLQAGMNLEARKTKKKIKGI--------QQATAGVSQDTS--ENPNKTIVPAALPQLTPTL 550

  Fly   123 -ARLQQASNQARQTYQDKTNPCIKSATATTSPRIEGAAVGTGI-GGGASPSFLQAAKLHHQRQLK 185
             :.|:....:......|.:.|.......||...:.|..|...: ...|.|.|         |.|.
  Rat   551 VSLLEVIEPEVLYAGYDSSVPDSAWRIMTTLNMLGGRQVIAAVKWAKAIPGF---------RNLH 606

  Fly   186 LDSRLS 191
            ||.:::
  Rat   607 LDDQMT 612

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
egNP_524206.1 NR_DBD_like 3..87 CDD:413390 34/89 (38%)
Nr3c1XP_017456328.1 GCR 27..420 CDD:426625
NR_DBD_GR_PR 435..513 CDD:143546 34/81 (42%)
NR_LBD_GR 549..795 CDD:132761 14/73 (19%)
Blue background indicates that the domain is not in the aligned region.

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