DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment eg and nhr-201

DIOPT Version :8

Sequence 1:NP_524206.1 Gene:eg / 40428 FlyBaseID:FBgn0000560 Length:373 Species:Drosophila melanogaster
Sequence 2:NP_503211.2 Gene:nhr-201 / 187408 WormBaseID:WBGene00019741 Length:416 Species:Caenorhabditis elegans

Alignment Length:78 Identity:33/79 (42%)
Similarity:42/79 (53%) Gaps:5/79 (6%)


  Fly     5 CKVCGEPAAGFHFGAFTCEGCKSFFGR--TYNNIAAIAGCKHNGDCVINKKNRTACKACRLRKCL 67
            |.||.:||.|.|||||||..|..||.|  ..||:..   ||.|..|..:|....:||.|||::|.
 Worm    20 CPVCWKPAHGMHFGAFTCRACAVFFRRFGASNNLKP---CKKNNVCNFDKNGYVSCKKCRLQRCF 81

  Fly    68 LVGMSKSGSRYGR 80
            .:||.....::.|
 Worm    82 DIGMKIDNFQFER 94

Known Domains:


GeneSequenceDomainRegion External IDIdentity
egNP_524206.1 NR_DBD_like 3..87 CDD:295381 33/79 (42%)
nhr-201NP_503211.2 ZnF_C4 19..88 CDD:197701 32/71 (45%)
Hormone_recep 184..383 CDD:278530
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 D1136195at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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