DRSC/TRiP Functional Genomics Resources

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Protein Alignment eg and Nr3c1

DIOPT Version :10

Sequence 1:NP_524206.1 Gene:eg / 40428 FlyBaseID:FBgn0000560 Length:373 Species:Drosophila melanogaster
Sequence 2:XP_006525721.1 Gene:Nr3c1 / 14815 MGIID:95824 Length:793 Species:Mus musculus


Alignment Length:201 Identity:57/201 - (28%)
Similarity:84/201 - (41%) Gaps:37/201 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 QLCKVCGEPAAGFHFGAFTCEGCKSFFGRTYNNIAAIAGCKHN------GDCVINKKNRTACKAC 61
            :||.||.:.|:|.|:|..||..||.||.|      |:.|.:||      .||:|:|..|..|.||
Mouse   435 KLCLVCSDEASGCHYGVLTCGSCKVFFKR------AVEGRQHNYLCAGRNDCIIDKIRRKNCPAC 493

  Fly    62 RLRKCLLVGMSKSGSRYGRRSNWFKIHCLLQEQQTTSGLGGGSSVGSGSGGGVSSASLEQL---- 122
            |.||||..||:....:..::....        ||.|:|:...:|  ..:...:..|:|.||    
Mouse   494 RYRKCLQAGMNLEARKTKKKIKGI--------QQATAGVSQDTS--ENANKTIVPAALPQLTPTL 548

  Fly   123 -ARLQQASNQARQTYQDKTNPCIKSATATTSPRIEGAAVGTGI-GGGASPSFLQAAKLHHQRQLK 185
             :.|:....:......|.:.|.......||...:.|..|...: ...|.|.|         |.|.
Mouse   549 VSLLEVIEPEVLYAGYDSSVPDSAWRIMTTLNMLGGRQVIAAVKWAKAIPGF---------RNLH 604

  Fly   186 LDSRLS 191
            ||.:::
Mouse   605 LDDQMT 610

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
egNP_524206.1 NR_DBD_like 3..87 CDD:413390 34/89 (38%)
Nr3c1XP_006525721.1 GCR 27..418 CDD:426625
NR_DBD_GR_PR 433..511 CDD:143546 34/81 (42%)
NR_LBD_GR 547..793 CDD:132761 14/73 (19%)
Blue background indicates that the domain is not in the aligned region.

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