DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Syn1 and SNTB2

DIOPT Version :10

Sequence 1:NP_524205.2 Gene:Syn1 / 40424 FlyBaseID:FBgn0037130 Length:627 Species:Drosophila melanogaster
Sequence 2:NP_006741.1 Gene:SNTB2 / 6645 HGNCID:11169 Length:540 Species:Homo sapiens


Alignment Length:614 Identity:226/614 - (36%)
Similarity:317/614 - (51%) Gaps:124/614 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 RCGNMETRVRGAWYRVLVTLETDFLAVSLDESCEAAQPSNDGQSTTLNGTLGSNHSGGGGGGAGG 94
            :.|.:|..:|..|.||:..|..:.|:::.|.:....:|:....:...||.       ..||||| 
Human    24 KAGLVELLLRERWVRVVAELSGESLSLTGDAAAAELEPALGPAAAAFNGL-------PNGGGAG- 80

  Fly    95 GGTGGGGQNGTLPNSASLQGMNIQDTELDGSASNDNGDRDPCLNNNNNAGDGGGMDMCDVPDHVA 159
                                     ..|.||.|...|...|.......||:.|          .:
Human    81 -------------------------DSLPGSPSRGLGPPSPPAPPRGPAGEAG----------AS 110

  Fly   160 NQKRHVRIIKSDNNGLGISIKGGRENRMPILISKIFRGMAADQAKGLYVGDAILTVNGEELRDAT 224
            ...|.||::|.:..||||||||||||||||||||||.|:||||::.|.:|||||:|||.:||.||
Human   111 PPVRRVRVVKQEAGGLGISIKGGRENRMPILISKIFPGLAADQSRALRLGDAILSVNGTDLRQAT 175

  Fly   225 HDEAVRALKRSGRVVDLEVKFLREVTPYFRKASIISEVGWELQRAFLCPLGPGVPTSPP------ 283
            ||:||:||||:|:.|.|||||:||||||.:|.|::|::.||          ...|.||.      
Human   176 HDQAVQALKRAGKEVLLEVKFIREVTPYIKKPSLVSDLPWE----------GAAPQSPSFSGSED 230

  Fly   284 --APK-TTPRADTRYIPLQLTHLARNLKYIDPENRCFELHSPDGVHSCILRAADSAEALVWFNAL 345
              :|| .....|.:.|||::...||||...|.|||..||||||..::.|||..|:|.|..||.|:
Human   231 SGSPKHQNSTKDRKIIPLKMCFAARNLSMPDLENRLIELHSPDSRNTLILRCKDTATAHSWFVAI 295

  Fly   346 HSAMGTSTQRALAEANRAL--TNLIG---ELKHIGWLSK--RMSGGGSSGSAGGGAASGGSGTSN 403
            |:.:.....:.|||.|..|  |:..|   |:|||.||::  ::.||                   
Human   296 HTNIMALLPQVLAELNAMLGATSTAGGSKEVKHIAWLAEQAKLDGG------------------- 341

  Fly   404 SVVAGELVSPSGRSSSESSDESDKWLPIFVAVTEREFRIYESAPWSVEAWSRPLEIYALATTRL- 467
                                 ..:|.|:.:||||::..:|:..||:.:||:.|...|.|..||| 
Human   342 ---------------------RQQWRPVLMAVTEKDLLLYDCMPWTRDAWASPCHSYPLVATRLV 385

  Fly   468 -AGAGNNSSLNGQQTTVFCVRCGTARGVLVYWLRSETHRDMAAWARSLVQGSHQAVNYQREFSFR 531
             :|:|..|...|...| |..|.|:.:|:.::..|.|||||:::|.|.||||.|.|....:|.|..
Human   386 HSGSGCRSPSLGSDLT-FATRTGSRQGIEMHLFRVETHRDLSSWTRILVQGCHAAAELIKEVSLG 449

  Fly   532 CLFQGRQCQLVVHINRGFFL-YDCGGFAPTTPTVATAKTQLWQFAFDKLKGSADDGARMLYLDF- 594
            |:..|::.:|.:|...||.: .:.||          :.:.|:::.|::||.|||||.|.||||| 
Human   450 CMLNGQEVRLTIHYENGFTISRENGG----------SSSILYRYPFERLKMSADDGIRNLYLDFG 504

  Fly   595 GEDGEIELDMECCPKPVVFVVHNCLSAKV 623
            |.:||:.:|:..||||:|||:|..|||||
Human   505 GPEGELTMDLHSCPKPIVFVLHTFLSAKV 533

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Syn1NP_524205.2 PH-like 30..>61 CDD:473070 9/30 (30%)
PDZ_syntrophin-like 163..245 CDD:467262 57/81 (70%)
PHsplit_syntrophin <293..351 CDD:269960 27/57 (47%)
SNTB2NP_006741.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 73..114 14/83 (17%)
PDZ_syntrophin-like 114..196 CDD:467262 57/81 (70%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 220..240 5/19 (26%)
PHsplit_syntrophin <244..301 CDD:269960 27/56 (48%)
PH 326..437 CDD:459697 45/151 (30%)
Calmodulin-binding. /evidence=ECO:0000250 518..540 12/16 (75%)

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