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Protein Alignment Syn1 and Grip

DIOPT Version :9

Sequence 1:	NP_001262192.1	Gene:	Syn1 / 40424	FlyBaseID:	FBgn0037130	Length:	627	Species:	Drosophila melanogaster
Sequence 2:	NP_572285.2	Gene:	Grip / 50391	FlyBaseID:	FBgn0029830	Length:	1058	Species:	Drosophila melanogaster

Alignment Length:	535	Identity:	121/535 - (22%)
Similarity:	173/535 - (32%)	Gaps:	175/535 - (32%)

- Green bases have known domain annotations that are detailed below.

  Fly    60 ESCEAAQPSNDGQSTTLNGTLGSNHSGGGGG---------------GAG------GGGTGGGGQN 103
            |:.....|.:.|.|....|..||:..|.|.|               |||      ..|:||.|
  Fly   430 ENPACGTPGSTGGSMGTGGIHGSSSLGMGLGLCRAESFPVLLDCSHGAGIILSETVSGSGGSG-- 492

  Fly   104 GTLPNSASLQGMNIQDTELDGSASNDNGDRDPCLN------------------NNNNAGDGGGMD 150
                  |......:.|:..|.|.....|||...:|                  :.|.|.:|...:
  Fly   493 ------AVAIAQIVPDSVADRSGCIQAGDRIVAINKMYSLDAAAMRQLLEGGSSRNGASNGTPAN 551

  Fly   151 MC------DVPDHV--ANQKRHVRIIKSDNNGLGISIKGGRENRMPILISKIFRGMAADQAKGLY 207
            ..      |:||.|  |:....|:::::...|||:|:.|....  .::||.:..|..|.::..|.
  Fly   552 WLELEIEFDMPDAVVPASGVFSVKLLRAGKCGLGLSVSGSSHG--GLVISDVKMGSPAHRSGSLR 614

  Fly   208 VGDAILTVNGEELRDATHDEAVRALKRSGR----------VVDLEVKFLREVTPYFRKAS--IIS 260
            .||.:|.|:...::   |......||..||          ...|.:|  |.|.|.|...|  |.|
  Fly   615 SGDILLAVDQHPVQ---HFNVDALLKEEGRSQNPSHSSSDFTTLTIK--RIVLPDFLPMSSPIYS 674

  Fly   261 EVGWELQRAFLCP-------LGPGVPTSPPAPKTTPRADTRYIPLQLTHLARNLKYIDPENRCFE 318
            .          ||       :|.||.||           |.:......::... ||.|    |..
  Fly   675 N----------CPASGINLGMGMGVSTS-----------TDHDLYSSAYVTAG-KYAD----CVS 713

  Fly   319 LHS----PDGVHSCILRAADSAEALVWFNALHSAMGTSTQRALAEANRALTNLIGELKHIGWLSK 379
            |.|    ||     ..|.....:|     :|.|.                     :|:
  Fly   714 LKSRTPQPD-----YFRVPSMDDA-----SLQSV---------------------QLR------- 740

  Fly   380 RMSGGGSSGSAGGGAASGGSGTSNSVVAGELVSPSGRSS-----SESSDESDKWLPIFVAVTERE 439
              ||.||:|  |..||:..|...||   ...|:|....|     .|..||.::..|.:      |
  Fly   741 --SGSGSNG--GNQAANSWSTGVNS---RSYVAPPNTQSLTTELPEEEDEQEQMYPGY------E 792

  Fly   440 FRIYESAPWSVEAWSRPLE--IYALATTRLAGAGNNSSLNGQQTTVFCVRCGTARGVLVYWLRSE 502
            ...|.|.  ...|...|:|  :|..|    |.:.:.||.:.....:|.||.....|:|...|...
  Fly   793 LNRYASV--DCTALPPPMENKVYGSA----ASSSSKSSGSSLHQIIFTVRLEPKGGLLGITLAGS 851

  Fly   503 THRDMAAWARSLVQG 517
            .....:.....||:|
  Fly   852 EDITKSITISGLVEG 866

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.