DRSC/TRiP Functional Genomics Resources

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Protein Alignment Syn1 and CG43707

DIOPT Version :9

Sequence 1:NP_001262192.1 Gene:Syn1 / 40424 FlyBaseID:FBgn0037130 Length:627 Species:Drosophila melanogaster
Sequence 2:NP_001260005.1 Gene:CG43707 / 33601 FlyBaseID:FBgn0263846 Length:2021 Species:Drosophila melanogaster


Alignment Length:375 Identity:74/375 - (19%)
Similarity:123/375 - (32%) Gaps:148/375 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly   167 IIKSDNNGLGISIKGGRENRMPILISKIFRGMAADQAKGLYVGDAILTVNGEELRDATHDEAVRA 231
            ::|||:...|..|.|.:    |::::.|.....| ::.||.|||.|::|||.::.|..|.|.|:.
  Fly  1703 VVKSDSGEFGFRIHGSK----PVVVAAIEPETPA-ESSGLEVGDIIISVNGVQVLDKHHTEVVKI 1762

  Fly   232 LKRSGRVVDLEV--------------------------------------KFLR---EVTP---- 251
            .......::|:|                                      |::|   .:.|    
  Fly  1763 AHDGCEKLELQVARTIGVLMHEQLEPPSQPIFSGYLWRQSGQAKGAPNSKKWVRRWFSLRPDNCL 1827

  Fly   252 -YFRKASIISEVGWELQRAF---LCPLGPGVPTSPPAPKTTPRADTRYIPLQLTHLARNLKYIDP 312
             |::.......||..:....   |||:..|.|.:                               
  Fly  1828 YYYKTEDDSQPVGAMIMAKHTVDLCPVDVGKPFA------------------------------- 1861

  Fly   313 ENRCFELHSPDGVHSCILRAADSAE-ALVWFNALHSAMGTSTQ------RAL--AEANRALTNLI 368
                |::.:.:|:...:  ||||.| |..|...|..|.....|      |.|  :.:|....:..
  Fly  1862 ----FKVDAGEGIPMYV--AADSDEMANRWLQLLRQAASQDNQWLDKSARCLYQSPSNIQRPDCF 1920

  Fly   369 GEL-----KHIGWLSKR----------MSGGGSSGSAGGGA----------ASGGSGTSNSVVAG 408
            |.|     :..|| |||          .....:|.||.|.|          ::..||..||.   
  Fly  1921 GYLLKLGSRWCGW-SKRYCVLKDACLYFYQDANSKSAFGMACLHGYKVASMSANASGKKNSF--- 1981

  Fly   409 ELVSPSGR-----SSSESSDESDKWLPIFVAVTEREFRIYESAPWSVEAW 453
            |:|.|..:     ..:||..:..:|:              .:..:|::.|
  Fly  1982 EIVPPETKLRHYFFCTESEMDKKRWI--------------SALEYSIDRW 2017

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Syn1NP_001262192.1 PH-like 30..>61 CDD:302622
PDZ_signaling 163..244 CDD:238492 24/114 (21%)
PHsplit_syntrophin <293..351 CDD:269960 11/58 (19%)
CG43707NP_001260005.1 PHA03369 <987..1394 CDD:223061
PDZ_signaling 1702..1775 CDD:238492 23/76 (30%)
PH 1792..1894 CDD:278594 22/138 (16%)
PH-like 1792..1893 CDD:302622 21/137 (15%)
PH-like 1911..2011 CDD:302622 23/117 (20%)
PH 1921..2014 CDD:278594 22/110 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

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