DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mi-2 and Chd6

DIOPT Version :10

Sequence 1:NP_001014591.1 Gene:Mi-2 / 40170 FlyBaseID:FBgn0262519 Length:1983 Species:Drosophila melanogaster
Sequence 2:NP_775544.2 Gene:Chd6 / 71389 MGIID:1918639 Length:2711 Species:Mus musculus


Alignment Length:2033 Identity:530/2033 - (26%)
Similarity:810/2033 - (39%) Gaps:562/2033 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   105 RKEEKQAAKEKESASSGM-----------PSVEDVCSAFSVCNVE-----------IEYSEEELQ 147
            :|:|||.:|.:....|.|           ||..| ||.....|:|           :..:|||..
Mouse     6 QKKEKQLSKLRALNHSPMSDASVNFDYKSPSPFD-CSPDQGENIEEAANHCLPHKNLYTTEEEAD 69

  Fly   148 SLTTYKAFMHH-----------VRPILQKENPKIAAPKLVMLVAAKWREFCESNPHIQQEGGAAG 201
            :|.:.|...|:           |:...:|:.|.                        :|||....
Mouse    70 TLFSRKLTSHNGMEDSGGRGTGVKKKRKKKEPG------------------------EQEGTKGS 110

  Fly   202 SGGSAGQARSVTGDEPEEPRSSRSSRNEKPDDIYEEAVEEEEEEEEEEKKPRRKRSGRGKKGRRP 266
            ........|.....||:|||.::..:..|.        .:|.::::..||||:.|...|.|.   
Mouse   111 KDREPKPKRKREPKEPKEPRRAKEPKRAKE--------PKETKQKDGVKKPRKHREASGTKE--- 164

  Fly   267 SGKVPTLKIKLLGKRKRDSSDEEQDASGASERDSDLEFERMLQKSDDSADEKEAPVSSKADNSAP 331
                        ||.||..:|                                   ......|..
Mouse   165 ------------GKEKRSCTD-----------------------------------YGSRTKSKK 182

  Fly   332 AAQDDGSGAPVVRKKAKTKIGNKFKKKNKLKKTKNFPEGEDGEHEHQDYCEVCQQGGEIILCDTC 396
            |:::.|. .||.|||       |.|:||:...       |..|.:|                 :.
Mouse   183 ASREQGP-TPVERKK-------KGKRKNETTV-------ESLELDH-----------------SL 215

  Fly   397 PRAYHLVCLEPELDEPPEGKWSCPHCEAD------GGAAEEEDDDEHQEFCRVCKDGGELLCCDS 455
            |        .|.|..|.|     |...||      |...:....:|..:| :|..|.||.:....
Mouse   216 P--------NPSLQSPEE-----PSESADSQKRRSGRQVKRRKYNEDLDF-KVVDDDGETIAVLG 266

  Fly   456 C--PSAYHTFCLNPPLDTIPDGDWRCPRCSCPPLTGKAEKIITWRWAQRSNDDGPSTSKGSKNSN 518
            .  .||.....|....:..|:.|           ....|||:..:..|..:...|...       
Mouse   267 AGRTSALSASTLAWQAEEPPEDD-----------ANIIEKILASKTVQEVHPGEPPFD------- 313

  Fly   519 SRVREYFIKWHNMSYWHCEWVPEVQLDVHHPLMIRSFQRKYDMEEPPKFEESLDEADTRYKRIQR 583
              :..:::|:.|.||.||:|....:|                 |:.|:..:          :|:|
Mouse   314 --LELFYVKYRNFSYLHCKWATMEEL-----------------EKDPRIAQ----------KIKR 349

  Fly   584 HKDKVGMKANDDAEVLEERFYKNGVKPEWLIVQRVINHRTARDGS-----TMYLVKWRELPYDKS 643
            .::|.....:...|..|:.|     .|:::.:.|::.....:|..     |.|||||..|||::|
Mouse   350 FRNKQAQMKHIFTEPDEDLF-----NPDYIEIDRILEVAHTKDAETGEEVTHYLVKWCSLPYEES 409

  Fly   644 TWEEEGDDIQGLRQAIDYYQDLRAVCTSETTQSRSKKSKKGRKSKLKVEDDEDRPVKHYTPPPEK 708
            |||.|.|        :|                 ..|.|:....::..|      |||.    |:
Mouse   410 TWELEED--------VD-----------------PAKVKEFESLQILPE------VKHV----ER 439

  Fly   709 PTTDLKKKYEDQPAFLEGTGMQLHPYQIEGINWLRYSWGQGIDTILADEMGLGKTIQTVTFLYSL 773
            |.:|..:|.|....:....  :|..||:||:|||.::|....:.|||||||||||||::.||..:
Mouse   440 PASDAWQKLETSREYRNSN--RLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSIAFLSEI 502

  Fly   774 YKEGHCRGPFLVAVPLSTLVNWEREFELWAPDFYCITYIGDKDSRAVIRENELSFEEGAIRGSKV 838
            :..| ..||||:..||||:.||||||..|. :...|.|.|.:.||.:|::.|:.:.:.  :|:.:
Mouse   503 FVRG-IHGPFLIIAPLSTITNWEREFRTWT-EMNAIVYHGSQISRQMIQQYEMVYRDA--QGNPL 563

  Fly   839 SRLRTTQYKFNVLLTSYELISMDAACLGSIDWAVLVVDEAHRLKSNQSKFFRILNSYTIAYKLLL 903
            |.:    :||:|::|::|:|..|...|..|.|:.:::|||||||:...|....|....:.:|:||
Mouse   564 SGV----FKFHVVITTFEMILADCPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKVLL 624

  Fly   904 TGTPLQNNLEELFHLLNFLSRDKFNDLQAFQGEFADVSKEEQVKRLHEMLGPHMLRRLKTDVLKN 968
            |||||||::||||.|||||...:|....||..||.|:..|||||:|..:|.|.||||||.||.||
Mouse   625 TGTPLQNSVEELFSLLNFLEPSQFPSETAFLEEFGDLKTEEQVKKLQSILKPMMLRRLKDDVEKN 689

  Fly   969 MPSKSEFIVRVELSAMQKKFYKFILTKNYEALNSKSGGGSC-SLINIMMDLKKCCNHPYLFPSAA 1032
            :..|.|.|:.|||:.:|||:|:.||.||:..|...:...:. :|||.||:|:||||||||...|.
Mouse   690 LAPKQETIIEVELTNIQKKYYRAILEKNFSFLTKGANQHNMPNLINTMMELRKCCNHPYLINGAE 754

  Fly  1033 E-------EATTAAGGLYEINSLTKAAGKLVLLSKMLKQLKAQNHRVLIFSQMTKMLDILEDFLE 1090
            |       :|.::....:::.::.:|||||||:.|:|.:|.|..|:|||||||.:.||||||:|.
Mouse   755 EKILEDFRKAHSSEASDFQLQAMIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLI 819

  Fly  1091 GEQYKYERIDGGITGTLRQEAIDRFNAPGAQQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHN 1155
            ..:|.||||||.:.|.|||.|||||..|.:.:|||||.||||||||||..|||.||:||||||.|
Mouse   820 QRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQN 884

  Fly  1156 DIQAFSRAHRIGQANKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVV----RPGMGGKGANFTKQ 1216
            |:||.:|.|||||:..|.:||.:||||.|..:...|..|:.|...::    |.|........:|.
Mouse   885 DLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAILQDINRKGSTNGVQQLSKM 949

  Fly  1217 ELDDILRFGTEDLFKEDDKEEAIHYDDKAVAELLDRTNRGIEEKESWANEYLSSFKVASYATKEE 1281
            |::|:||.|...... |:::|...:.::.:.::|.|....|..:.....   |:|..||:.....
Mouse   950 EVEDLLRKGAYGALM-DEEDEGSKFCEEDIDQILQRRTHTITIQSEGKG---STFAKASFVASGN 1010

  Fly  1282 EEEEETEIIKQDAENSDPAY---WVKLLRHHYEQHQEDVGRSLGKGKRVRKQVNYTDGGVVAADT 1343
                     :.|....||.:   |.|:.....|.:.|.....:.: .|||||            |
Mouse  1011 ---------RTDISLDDPNFWQKWAKIAELDTEANNEKESLVIDR-PRVRKQ------------T 1053

  Fly  1344 TRDDSNWQDNGSEYNSEYSAGSDEDGGDDDFDDQNGAERKAKRRLERRDDRPLPPLLARVGGNIE 1408
            ...:|..:|...|: ||..:.|||             .....|||..|..|.|.....||..|:.
Mouse  1054 KHYNSFEEDELMEF-SELDSDSDE-------------RPTRSRRLSDRARRYLRAECFRVEKNLL 1104

  Fly  1409 VLGF----------------NARQRKSFLNAIMRYGM------------------PPQD------ 1433
            :.|:                |.:..:....|::.|.:                  |.:|      
Mouse  1105 IFGWGRWKDILTHGRFKWPLNEKDMEMICRALLVYCVKHYKGDEKIKSFIWELITPSKDGQVQTL 1169

  Fly  1434 ---AFNSQWLVRDLRGKSERNFKAYVSLFMRHLCEPGADNAETFA----------DGVPREGLSR 1485
               :..|..:.|..:||..:|          .|..|...||:..|          ||..:.  .:
Mouse  1170 QNHSGLSAPVPRGRKGKKTKN----------QLLLPELKNADWLATCNPEVVLHDDGYKKH--LK 1222

  Fly  1486 QH---VLTRIGVMSLIRKKVQEFEHINGYYSMP----ELILKPCEPVR----------------- 1526
            ||   ||.|:.::..::.::........:...|    :::|...:.|.                 
Mouse  1223 QHCNKVLLRVRMLYYLKAEILGEAADKAFEGTPARELDVLLPDIDYVEIPVDWWDAEADKSLLIG 1287

  Fly  1527 ---------SALKQDVAALEAPPTGGNVDKSATTSNSVTPATSAAPSPAPASEKGEDKDKDSEKE 1582
                     :|::.|.|.......|...:||.:....||..||..|      |:|....:||.::
Mouse  1288 VFKHGYERYNAMRADPALCFLEKVGMPDEKSLSAEQGVTDGTSDIP------ERGNIDKEDSAED 1346

  Fly  1583 K----DKTSAEKS--------EVKQEQEAEEDKKPGDVKQENPVEEAAGDTKPSDAEVKTEVAKT 1635
            |    .|.:|..|        |.|.:.:|.:|....| |...||..|.      .|.::..|...
Mouse  1347 KLDGLQKQTASPSDGSDGIFGEKKDDSQAAQDGSDPD-KSPWPVSSAL------TARLRRLVTIY 1404

  Fly  1636 E--PKEETKDPE----------VKEE--PKTEEKE------------KEKVDDKKPIPPTTVIDD 1674
            :  .::|...||          |:||  .:|.|.:            :|:.|..:.:....|:.|
Mouse  1405 QRCNRKELCRPEILGPGNQGYWVQEEVFRRTSEMDLINKEAQKRWTRREQADFYRTVSSFGVVYD 1469

  Fly  1675 DDDDVMIVKEDGELEKPSASSPKDQKAVAAATSAATGATGKGAEDSLEVLKRKFMF---NIA--- 1733
                                  :::||.............|.:::|||.....|:.   |:.   
Mouse  1470 ----------------------QEKKAFDWTQFRIISRLDKKSDESLEHYFYSFVAMCRNVCRLP 1512

  Fly  1734 ---DGG--FTELHTLWLNEEKAAV-----------------------------PGREYEIWHR-- 1762
               |.|  ...::...:.||:||.                             |.....:|..  
Mouse  1513 AWKDDGPPDASIYVEPITEERAAKTLYRIELLRKVREQVLMCPQLHERLQLCRPSLYLPVWWECG 1577

  Fly  1763 RHDYWLLAGIVTHGYGRWQDIQNDIRFAIINEPFKMDVGKGNFLEIKNKFLARRFKLLEQA---L 1824
            :||..||.|...||..|..       :.|:|:|      :.:||:....: |:..:...||   |
Mouse  1578 KHDRDLLIGTAKHGLNRTD-------YYIMNDP------QLSFLDAYRNY-AQHKRTDTQAPGSL 1628

  Fly  1825 VIEEQLRRAAYLNLAQDP-SHPAMSLNARFAEVECLAESHQHLSKESLAGNKPANAVLHKVLNQL 1888
            ....|.....|.:|...| |..:.||.:....:..:.....||....  |..| :......::::
Mouse  1629 CCLYQSNSKLYESLTYTPVSRTSESLESEPENLMRMESRDDHLCLPE--GGLP-DITCENFVSKV 1690

  Fly  1889 EELLSDMKSDVSRLPATL 1906
            :|::| :..|.:.||.:|
Mouse  1691 QEVIS-LDHDENLLPESL 1707

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mi-2NP_001014591.1 CHDNT 138..191 CDD:462357 10/74 (14%)
TNG2 <282..422 CDD:227367 24/139 (17%)
PHD1_CHD_II 380..422 CDD:277006 6/41 (15%)
PHD2_CHD_II 440..482 CDD:277007 10/43 (23%)
CD1_tandem_CHD3-4_like 487..557 CDD:349314 13/69 (19%)
CD2_tandem_CHD3-4_like 610..664 CDD:349309 19/58 (33%)
PLN03142 720..>1234 CDD:215601 241/525 (46%)
DUF1087 <1292..1334 CDD:461922 12/44 (27%)
CHDII_SANT-like 1380..1517 CDD:461920 33/196 (17%)
CHDCT2 1757..1902 CDD:462358 32/150 (21%)
Chd6NP_775544.2 Required for DNA-dependent ATPase activity. /evidence=ECO:0000250 1..746 267/965 (28%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..52 14/46 (30%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 66..243 55/303 (18%)
PTZ00449 <101..372 CDD:185628 80/450 (18%)
CD1_tandem_CHD5-9_like 287..352 CDD:349315 18/111 (16%)
CD2_tandem_CHD5-9_like 371..429 CDD:349310 21/82 (26%)
PLN03142 459..>984 CDD:215601 244/533 (46%)
DEAD-like_helicase_N 460..681 CDD:475120 103/228 (45%)
DEAH box 597..600 2/2 (100%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1318..1389 20/77 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1951..1978
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1997..2059
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2124..2147
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2321..2350
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2373..2419
BRK 2402..2435 CDD:470653
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2550..2602
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2641..2711
Blue background indicates that the domain is not in the aligned region.

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