DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mi-2 and RAD54L2

DIOPT Version :10

Sequence 1:NP_001014591.1 Gene:Mi-2 / 40170 FlyBaseID:FBgn0262519 Length:1983 Species:Drosophila melanogaster
Sequence 2:NP_055921.2 Gene:RAD54L2 / 23132 HGNCID:29123 Length:1467 Species:Homo sapiens


Alignment Length:1399 Identity:312/1399 - (22%)
Similarity:510/1399 - (36%) Gaps:437/1399 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   406 EPELDEPPEGKWSCPHCEADGGAAEEEDDDEHQEFCRVCKDGGELLCCDSCPSAYHTFCLNPPLD 470
            :|:||         |..|.:....|||:::...|.|.  :|..|.|..|  || ....|......
Human    10 DPDLD---------PDVELEDAEEEEEEEEVAVEECD--RDDEEDLLDD--PS-LEGMCGTEHAQ 60

  Fly   471 TIPDGDWRCPRCSCPPLTGKAEKIITWRWAQRSN--DDGPSTSKGSKNSNSRVREYFIKWHNMSY 533
            ...||. :.|||: ...:.::|.....|..|..|  .:.|...:..|.|:.|..           
Human    61 LGEDGQ-QPPRCT-STTSSQSEPSEQLRRHQGKNLASEDPKKKRAQKPSHMRRN----------- 112

  Fly   534 WHCEWVPEVQLDVHHPLMIRSFQRKYDMEEPPKFEESLDEADTRYKRIQRHKD------------ 586
                              ||...|: |..||.......:|.:.|.:..|:.||            
Human   113 ------------------IRKLLRE-DQLEPVTKAAQQEELERRKRLEQQRKDYAAPIPTVPLEF 158

  Fly   587 ---KVGMKANDDAEVLEERFYKNGVKPEWLIVQRVI---------NHRTARDGSTMYLVKWRELP 639
               ::.::|:|..::           |..::.|.||         :.:::||          |: 
Human   159 LPEEIALRASDGPQL-----------PPRVLAQEVICLDSSSGSEDEKSSRD----------EV- 201

  Fly   640 YDKSTWEEEGDDIQGLRQAIDYYQDLRAVCTSETTQSRSKKSKKGR---KSKLKVEDDEDRPVKH 701
            .:.|:.||:               .|..|.:||:.....::.:||.   ...|...|...|.:.:
Human   202 IELSSGEED---------------TLHIVDSSESVSEDDEEEEKGGTHVNDVLNQRDALGRVLVN 251

  Fly   702 YTPPPEKPTTDLKKKYEDQPAFLEGTGMQLHPYQIEGINWL---------RYSWGQGIDTILADE 757
            ...|||:....|..:          ....:.|:||.||.:|         |:....|...|||..
Human   252 LNHPPEEENVFLAPQ----------LARAVKPHQIGGIRFLYDNLVESLERFKTSSGFGCILAHS 306

  Fly   758 MGLGKTIQTVTFLYSLYKEGHCRGPFLVAVPLSTLVNWEREFELWAPD----------------F 806
            ||||||:|.::|:..|::....: ..|..||::||.||..||.:|.|.                |
Human   307 MGLGKTLQVISFIDVLFRHTPAK-TVLAIVPVNTLQNWLAEFNMWLPPPEALPADNKPEEVQPRF 370

  Fly   807 YCITYIGDKD----SRAVIRENELSFEEGAI--RGSKVSRLRTTQYKF------NVLLTSYE-LI 858
            :.:..:.|:.    |||.:..:.:|  ||.:  .|.::.||.|.:..|      .....|:. :|
Human   371 FKVHILNDEHKTMASRAKVMADWVS--EGGVLLMGYEMYRLLTLKKSFATGRPKKTKKRSHPVII 433

  Fly   859 SMD--------------AACLGSIDWAVLVVDEAHRLKSNQSKFFRILNSYTIAYKLLLTGTPLQ 909
            .:|              |.|....|  |::.||.||:|:.|:...:.|.:.....:::|||.|||
Human   434 DLDEEDRQQEFRREFEKALCRPGPD--VVICDEGHRIKNCQASTSQALKNIRSRRRVVLTGYPLQ 496

  Fly   910 NNLEELFHLLNFLSRDKFNDLQAF---------QGEFADVSKEE-QVKR-----LHEMLGPHMLR 959
            |||.|.:.:::|:..|.....|.|         .|:..|.:.:: ::.|     ||.:|...:.|
Human   497 NNLIEYWCMVDFVRPDFLGTRQEFSNMFERPILNGQCIDSTPQDVRLMRYRSHVLHSLLEGFVQR 561

  Fly   960 RLKTDVLKNMPSKSEFIVRVELSAMQKKFYKFILTKNYEALNSKSGGGSCSLINIMMDLKKCC-- 1022
            |..|.:..::|:|.|.::.|.||.:|:..|    |:..:........|...| |.:.....||  
Human   562 RGHTVLKIHLPAKEENVILVRLSKIQRDLY----TQFMDRFRDCGSSGWLGL-NPLKAFCVCCKI 621

  Fly  1023 -NHPYLFPSAAEEATTA------------AG-----------GLYEINSLTKAAG---------- 1053
             |||.:...|.::.:.|            ||           |..|.::|..:.|          
Human   622 WNHPDVLYEALQKESLANEQDLDVEELGSAGTSARCPPQGTKGKGEDSTLASSMGEATNSKFLQG 686

  Fly  1054 -----------------------------------KLVLLSKMLKQLKAQNHRVLIFSQMTKMLD 1083
                                               |:|||..::::......::|:|||....|.
Human   687 VGFNPFQERGNNIVTYEWAKDLLTNYQTGVLENSPKMVLLFHLIEESVKLGDKILVFSQSLSTLA 751

  Fly  1084 ILEDFL-----------EGE-------QYKYERIDGGITGTLRQEAIDRFNAP-GAQQFVFLLST 1129
            ::|:||           ||:       ...|.|:||......|:..|::||.| ....::|||||
Human   752 LIEEFLGKREVPCPPGTEGQGAQKWVRNISYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLST 816

  Fly  1130 RAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRNSVEERV--TQVAK 1192
            |||.||:||..|:.|:::|:.|||.:|.||..|.:|.||.....|||.|...::|:::  .|::|
Human   817 RAGCLGVNLIGANRVVVFDASWNPCHDAQAVCRVYRYGQKKPCYIYRLVADYTLEKKIYDRQISK 881

  Fly  1193 RKMMLTHLVV---RPGMGGKGANFTKQELDDILRFGTEDLFKEDDKEEAIHYDDKAVAELLDRTN 1254
            :.|  :..||   .|.:     |||::|::::|                 |:.:|..|..:....
Human   882 QGM--SDRVVDDLNPML-----NFTRKEVENLL-----------------HFVEKEPAPQVSLNV 922

  Fly  1255 RGIEEKESWANEYLSSFKVASYATKEEEEEEETEIIKQD-----AENSDPAYWVKLLRHHYEQHQ 1314
            :||:|...    .|:..|.....|||..|.|...:.::|     ||.       |..:..||:.:
Human   923 KGIKESVL----QLACLKYPHLITKEPFEHESLLLNRKDHKLTKAEK-------KAAKKSYEEDK 976

  Fly  1315 EDVGRSLGKGKRVRKQVNYTDGGVVAADTTRDDS----------NWQDNGSEYNSEYSAGSDEDG 1369
                         |..|.||...........|.|          |||....              
Human   977 -------------RTSVPYTRPSYAQYYPASDQSLTSIPAFSQRNWQPTLK-------------- 1014

  Fly  1370 GDDDFDDQNGAERKAKRRLERRDDRPLPPLLARVGGNIEVLGFNARQRKSFLNAIMRYGMPPQDA 1434
            ||:        :..|..|..:....|:.|....:||::.............:|.:.|.|:..|..
Human  1015 GDE--------KPVASVRPVQSTPIPMMPRHVPLGGSVSSASSTNPSMNFPINYLQRAGVLVQKV 1071

  Fly  1435 FNSQWLV------------RDLRGKSERNFKAYVSLFMRHLCEPGADNAETF---ADGVPREGLS 1484
            ..:..:|            |...|:|....:.....::|      ..:...|   |.|.|:    
Human  1072 VTTTDIVIPGLNSSTDVQARINAGESIHIIRGTKGTYIR------TSDGRIFAVRATGKPK---- 1126

  Fly  1485 RQHVLTRIGVMSLIRKKVQEFEHI-NGYYSM-------PELILKPCEP----VRSALKQ--DVAA 1535
                :...|.|:....:....|.. ||.:|.       ||.:.:|..|    :.|.|:|  ||||
Human  1127 ----VPEDGRMAASGSQGPSCESTSNGRHSASSPKAPDPEGLARPVSPDSPEIISELQQYADVAA 1187

  Fly  1536 LEAPPTGGNVDKSATTSNSVTPATSAA-PSPAPA 1568
                         |..|...:|:|:|| |.| ||
Human  1188 -------------ARESRQSSPSTNAALPGP-PA 1207

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mi-2NP_001014591.1 CHDNT 138..191 CDD:462357
TNG2 <282..422 CDD:227367 4/15 (27%)
PHD1_CHD_II 380..422 CDD:277006 4/15 (27%)
PHD2_CHD_II 440..482 CDD:277007 11/41 (27%)
CD1_tandem_CHD3-4_like 487..557 CDD:349314 10/71 (14%)
CD2_tandem_CHD3-4_like 610..664 CDD:349309 10/62 (16%)
PLN03142 720..>1234 CDD:215601 170/675 (25%)
DUF1087 <1292..1334 CDD:461922 8/46 (17%)
CHDII_SANT-like 1380..1517 CDD:461920 26/159 (16%)
CHDCT2 1757..1902 CDD:462358
RAD54L2NP_055921.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..150 41/185 (22%)
HepA 110..890 CDD:440319 200/868 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 186..234 12/73 (16%)
DEXHc_ARIP4 271..547 CDD:350827 75/280 (27%)
DEAH box 463..466 2/2 (100%)
LXXLL motif 1 551..555 2/3 (67%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 649..673 5/23 (22%)
PHA03247 <1106..1414 CDD:223021 32/130 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1120..1171 12/58 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1184..1221 14/38 (37%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1247..1284
LXXLL motif 2 1329..1333
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1445..1467
Blue background indicates that the domain is not in the aligned region.

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