DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mi-2 and ERCC6

DIOPT Version :10

Sequence 1:NP_001014591.1 Gene:Mi-2 / 40170 FlyBaseID:FBgn0262519 Length:1983 Species:Drosophila melanogaster
Sequence 2:NP_000115.1 Gene:ERCC6 / 2074 HGNCID:3438 Length:1493 Species:Homo sapiens


Alignment Length:1766 Identity:392/1766 - (22%)
Similarity:623/1766 - (35%) Gaps:552/1766 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   124 SVEDVCSAFSVCNVEIEYSEEELQSLTTYKAFMHHVRPILQKENPKIAAP-----KLVMLVAAKW 183
            ::.:...|..:.:||.|| ...|..||:....:..:..|:::.:|:.|..     ||..:...|:
Human   116 AIHEASRASQLVDVEKEY-RSVLDDLTSCTTSLRQINKIIEQLSPQAATSRDINRKLDSVKRQKY 179

  Fly   184 ------REFCESNPHIQQEGGAAGSGGSAGQARSVTGDEPEEPRSSRSSRNEKPDDIYEEAVEE- 241
                  ::......|:|...|.|........| |:..|....|.|..|......:..:||.:.. 
Human   180 NKEQQLKKITAKQKHLQAILGGAEVKIELDHA-SLEEDAEPGPSSLGSMLMPVQETAWEELIRTG 243

  Fly   242 ------EEEEEEEEKKPRRKRSGRGKKGRRPSGKVPTLKIKLLGKRKRDSSDEEQDASGASERDS 300
                  .:..:::|||||                    ||.|            .:|||..:..:
Human   244 QMTPFGTQIPQKQEKKPR--------------------KIML------------NEASGFEKYLA 276

  Fly   301 D---LEFERMLQKSDDSADEK-EAPVSSKADNSAPAAQDDGSGAPVVRKKAKTKIGNKFKKKNKL 361
            |   |.|||..|..:..|..| .|||:       |.|.......|  .|||:.    ..||:.:|
Human   277 DQAKLSFERKKQGCNKRAARKAPAPVT-------PPAPVQNKNKP--NKKARV----LSKKEERL 328

  Fly   362 KKTKNFPEGEDGEHEHQDYCEVCQQGGEIILCDTCPRAYHLVCLEP-ELDEPPEGKWSCPHCEAD 425
            ||           |..:......|..|::.|    |:|     ..| |.|..||.:......|::
Human   329 KK-----------HIKKLQKRALQFQGKVGL----PKA-----RRPWESDMRPEAEGDSEGEESE 373

  Fly   426 GGAAEEEDDDEHQEFCRVCKDGGELLCCDSCPSAYHTFCLNPPLDTIPDG-DWRCPRCSCPPLTG 489
            ....|||:::|..|.     :|.|                   .|...|| |:.....   |..|
Human   374 YFPTEEEEEEEDDEV-----EGAE-------------------ADLSGDGTDYELKPL---PKGG 411

  Fly   490 KAEKIITWRWAQRSNDDGPSTSKGSKNSNSRVREYFIKWHNMSYWHCEWVPEVQLDVHHPLMIRS 554
            |.:|.:.   .|..:||                 :|                             
Human   412 KRQKKVP---VQEIDDD-----------------FF----------------------------- 427

  Fly   555 FQRKYDMEEPPKFEE----SLDEADTRYKRIQRHKDKVGMKANDDAEVLEERFYKNGVKPEWLIV 615
                     |...||    |:.|.....:::.|::|                             
Human   428 ---------PSSGEEAEAASVGEGGGGGRKVGRYRD----------------------------- 454

  Fly   616 QRVINHRTARDGSTMYLVKWRELPYDKSTWEEEGDDIQGLRQAIDYYQDLRAVCTSETTQSRSKK 680
                                            :||:        |||:        :..:..:|.
Human   455 --------------------------------DGDE--------DYYK--------QRLRRWNKL 471

  Fly   681 SKKGRKSKLKVEDDEDRPVKHYTPPPEKPTTDLKKKYEDQPAFLEGTGMQLHPYQIEGINWLRYS 745
            ..:.::.:||:|||.           |:...:..:.:: .|.||   ..:|..||..|:.||...
Human   472 RLQDKEKRLKLEDDS-----------EESDAEFDEGFK-VPGFL---FKKLFKYQQTGVRWLWEL 521

  Fly   746 WGQGIDTILADEMGLGKTIQTVTFLYSL-YKEGHCR---------GPFLVAVPLSTLVNWEREFE 800
            ..|....||.||||||||||.:.||..| |.:...|         ||.::..|.:.:..|.:||.
Human   522 HCQQAGGILGDEMGLGKTIQIIAFLAGLSYSKIRTRGSNYRFEGLGPTVIVCPTTVMHQWVKEFH 586

  Fly   801 LWAPDFYCITYIGDKDSRAVIRENELSFEEGAIRGSKVSRLRTTQYKFNVLLTSYELISMDAACL 865
            .|.|.|           |..|..     |.|:....|...:|...:...:|:|||..|.:....:
Human   587 TWWPPF-----------RVAILH-----ETGSYTHKKEKLIRDVAHCHGILITSYSYIRLMQDDI 635

  Fly   866 GSIDWAVLVVDEAHRLKSNQSKFFRILNSYTIAYKLLLTGTPLQNNLEELFHLLNFLSRDKFNDL 930
            ...||..:::||.|::::..:........:...::::|:|:|:||||.||:.|.:|:...|...|
Human   636 SRYDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLRELWSLFDFIFPGKLGTL 700

  Fly   931 QAFQGEFA--------DVSKEEQVKR-------LHEMLGPHMLRRLKTDVLK--NMPSKSEFIVR 978
            ..|..:|:        ..:...|||.       |.:.:.|::|||:|:||..  ::|.|:|.::.
Human   701 PVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTINPYLLRRMKSDVKMSLSLPDKNEQVLF 765

  Fly   979 VELSAMQKKFYK-FILTKN-YEALNSKSGGGSCSLINIMMDLKKCCNHPYLFPSAAEEATTAAGG 1041
            ..|:..|.|.|: |:.:|. |..||     |...:.:.::.|:|.||||.||          :||
Human   766 CRLTDEQHKVYQNFVDSKEVYRILN-----GEMQIFSGLIALRKICNHPDLF----------SGG 815

  Fly  1042 LYEINSLT------------KAAGKLVLLSKMLKQLKAQNHRVLIFSQMTKMLDILEDFLEGEQY 1094
            ...:..|.            |.:||::::..:||....|..|||:|||..:||||||.||..::|
Human   816 PKNLKGLPDDELEEDQFGYWKRSGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKY 880

  Fly  1095 KYERIDGGITGTLRQEAIDRFNAPGAQQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQA 1159
            .|.::||..|...||..|.|:| .....|||||:||.||||:||..|:.|:|||.||||..|.||
Human   881 TYLKMDGTTTIASRQPLITRYN-EDTSIFVFLLTTRVGGLGVNLTGANRVVIYDPDWNPSTDTQA 944

  Fly  1160 FSRAHRIGQANKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVVRPGMGGKGANFTKQELDDILRF 1224
            ..||.||||..:|.:||.:|..::||::......|..||:.|::.         .||.     ||
Human   945 RERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKD---------PKQR-----RF 995

  Fly  1225 GTEDLFKEDDKEEAIHYDDKAVAELLDRTNRGIEEKESWANEYLSSFKVASYATKEEEEEEETEI 1289
                 ||.:|                                   .:::.:..:.:..:..||..
Human   996 -----FKSND-----------------------------------LYELFTLTSPDASQSTETSA 1020

  Fly  1290 IKQDAENSDPAYWVKLLRHHYEQHQEDVGRSLGKGKRVRKQVNYTDGGVVAADTTRDDSNWQDNG 1354
            |.. ...||    |:..:.|.::.   :..:.|....|.|:..:....:...|.|..:...:..|
Human  1021 IFA-GTGSD----VQTPKCHLKRR---IQPAFGADHDVPKRKKFPASNISVNDATSSEEKSEAKG 1077

  Fly  1355 SEYNSEYSAGSDEDGGDDDF------DDQNGAERKAKRRLERRDDRPLPPLLARVGGNIEVLGFN 1413
            :|.|:..|..||....|...      :|:.|.|..|...         |..|:.:.||.|....:
Human  1078 AEVNAVTSNRSDPLKDDPHMSSNVTSNDRLGEETNAVSG---------PEELSVISGNGECSNSS 1133

  Fly  1414 ARQRKSF----------LNAIMRYGMPPQDAFNSQWLVRDLRGKSERNFKAYVSLFMRHLCEPGA 1468
            ...:.|.          |....:...|.|....:.|..:.:    |.||..:.|....|      
Human  1134 GTGKTSMPSGDESIDEKLGLSYKRERPSQAQTEAFWENKQM----ENNFYKHKSKTKHH------ 1188

  Fly  1469 DNAETFADGVPREGLSRQHVL------------------TRIGVMSLIRK----------KVQEF 1505
                    .|..|....:|:.                  |||  ..|::|          |.:..
Human  1189 --------SVAEEETLEKHLRPKQKPKNSKHCRDAKFEGTRI--PHLVKKRRYQKQDSENKSEAK 1243

  Fly  1506 EHINGYYSMPELILKPCEPVRSALKQDVAALEAPPTGGNVDKSATTSNSVTP------------- 1557
            |..|..|.: |.:.|....|.|.:|.|.....|.|....|:..|   |.|..             
Human  1244 EQSNDDYVL-EKLFKKSVGVHSVMKHDAIMDGASPDYVLVEAEA---NRVAQDALKALRLSRQRC 1304

  Fly  1558 --ATSAAP--------SPAPASEKGEDKDKDSEKEKDKTSAEKSEVKQEQEAEED---KKPGDVK 1609
              |.|..|        |.|||.:    |.:..:|.....|.:........|..:|   ||.|   
Human  1305 LGAVSGVPTWTGHRGISGAPAGK----KSRFGKKRNSNFSVQHPSSTSPTEKCQDGIMKKEG--- 1362

  Fly  1610 QENPVEEAAGDTKPSDAE-----VKTEVAKTEPKEETKDPEVKEEPKTEEKEKEKVDDKKPIPPT 1669
            ::|..|..:|..:.:|:.     ..:.:||...:.....||      ..|.|...:.:...:.||
Human  1363 KDNVPEHFSGRAEDADSSSGPLASSSLLAKMRARNHLILPE------RLESESGHLQEASALLPT 1421

  Fly  1670 TVIDDDDDDVMI---------VKEDGELEKPSASSPKDQKAVAAATSAATGATGKGAEDSLEVLK 1725
            |    :.||:::         ...||:     ||:.:..:...:..||:.....:      |:|:
Human  1422 T----EHDDLLVEMRNFIAFQAHTDGQ-----ASTREILQEFESKLSASQSCVFR------ELLR 1471

  Fly  1726 RKFMFNIADGG 1736
            ....|:...||
Human  1472 NLCTFHRTSGG 1482

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mi-2NP_001014591.1 CHDNT 138..191 CDD:462357 12/63 (19%)
TNG2 <282..422 CDD:227367 36/144 (25%)
PHD1_CHD_II 380..422 CDD:277006 10/42 (24%)
PHD2_CHD_II 440..482 CDD:277007 6/42 (14%)
CD1_tandem_CHD3-4_like 487..557 CDD:349314 7/69 (10%)
CD2_tandem_CHD3-4_like 610..664 CDD:349309 5/53 (9%)
PLN03142 720..>1234 CDD:215601 179/554 (32%)
DUF1087 <1292..1334 CDD:461922 7/41 (17%)
CHDII_SANT-like 1380..1517 CDD:461920 29/174 (17%)
CHDCT2 1757..1902 CDD:462358
ERCC6NP_000115.1 N-terminal domain, essential for its chromatin remodeling activity. /evidence=ECO:0000269|PubMed:29203878 1..510 113/637 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..39
cc_ERCC-6_N 83..159 CDD:411064 9/43 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 287..323 12/48 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 344..453 35/202 (17%)
HepA 391..987 CDD:440319 204/799 (26%)
DEAH box. /evidence=ECO:0000255|PROSITE-ProRule:PRU00541 646..649 2/2 (100%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1042..1147 22/113 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1181..1247 12/81 (15%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1318..1384 16/72 (22%)
CSA-interacting motif (CIM). /evidence=ECO:0000269|PubMed:32355176 1386..1398 2/11 (18%)
Ubiquitin-binding domain (UBD). /evidence=ECO:0000269|PubMed:20541997 1400..1428 9/37 (24%)
CSB_WHD 1420..1492 CDD:439329 16/78 (21%)
Winged-helix domain (WHD). /evidence=ECO:0000305|PubMed:29203878 1429..1493 11/65 (17%)
Essential for its interaction with RNA polymerase II, transcription-coupled nucleotide excision repair activity, association with chromatin after UV irradiation and for mediating the UV-induced translocation of ERRC8 to the nuclear matrix. /evidence=ECO:0000269|PubMed:26620705 1446..1493 8/43 (19%)
Blue background indicates that the domain is not in the aligned region.

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