DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mi-2 and smrc-1

DIOPT Version :10

Sequence 1:NP_001014591.1 Gene:Mi-2 / 40170 FlyBaseID:FBgn0262519 Length:1983 Species:Drosophila melanogaster
Sequence 2:NP_741192.1 Gene:smrc-1 / 175907 WormBaseID:WBGene00015806 Length:690 Species:Caenorhabditis elegans


Alignment Length:619 Identity:153/619 - (24%)
Similarity:248/619 - (40%) Gaps:154/619 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   706 PEKPTTDLKKKYEDQPAFLEGTGMQLHPYQIEGINWLRYSWGQGIDTILADEMGLGKTIQTVTFL 770
            |:...:||....:  |:.:|    :|.|||.||:.:.....|:   .:|||||||||::|.:| :
 Worm   181 PKAAPSDLNTVMD--PSLIE----RLFPYQKEGVIFALERDGR---ILLADEMGLGKSVQALT-I 235

  Fly   771 YSLYKEGHCRGPFLVAVPLSTLVNWEREFELWAPDFYCITYIGDKDSRA---VIRENELSFEEGA 832
            ...||   ...|.|:..|.|....|:::...:.|..:.| :|.||.|..   |...|        
 Worm   236 ARYYK---ADWPLLIVCPASVKGAWKKQLNTFFPIIHRI-FIVDKSSDPLPDVCTSN-------- 288

  Fly   833 IRGSKVSRLRTTQYKFNVLLTSYELISMDAACLGSIDWAVLVVDEAHRLKSNQSKFFRILN--SY 895
                            .|.:.|||.:.:....|....:..::.||:|.||..:::..::..  |.
 Worm   289 ----------------TVAIMSYEQMVLKHDILKKEKYRTIIFDESHMLKDGKARRTKVATDLSK 337

  Fly   896 TIAYKLLLTGTPLQNNLEELFHLLNFLSRDKFNDLQAF--------QGEFADVSK-----EE--- 944
            ...:.:||:|||..:...|||..:..:....|.:...|        ||.|...:|     ||   
 Worm   338 VALHVILLSGTPALSRPSELFTQIRLIDHKLFTNFHEFAIRYCDGKQGRFCFEAKGCTNSEELAA 402

  Fly   945 -QVKRLHEMLGPHMLRRLKTDVLKNMPSKSEFIVRV-------ELSAMQKKFYKFILTKNYEALN 1001
             ..|||       |:||||.||||::|.|...:|.|       .:..:||      ...:||.:|
 Worm   403 IMFKRL-------MIRRLKADVLKDLPEKRREVVYVSGPTIDARMDDLQK------ARADYEKVN 454

  Fly  1002 SKSGGGSCSLINIMMDLKKCCNHPYLFPSAAEEATTAAGGLYEINSLTKAAGKLVLLSKMLKQLK 1066
            |             |:.|    |..|..            .|.:..:.|||.....:.:......
 Worm   455 S-------------MERK----HESLLE------------FYSLTGIVKAAAVCEHILENYFYPD 490

  Fly  1067 AQNHRVLIFSQMTKMLDILEDFLEGEQYKYERIDGGITGTLRQEAIDRFNAPGAQQFVFLLSTRA 1131
            |...:||||:....:||.::..:...:....||||......|....|.|......: |.:||..|
 Worm   491 APPRKVLIFAHHQIVLDTIQVEVNKRKLGSIRIDGKTPSHRRTALCDSFQTDDNIR-VAVLSITA 554

  Fly  1132 GGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRNSVEERVTQVAKRKMM 1196
            .|:||.|..|..|:..:..:||...:||..||||:||.:.|.:...:.:.:.::.:.        
 Worm   555 AGVGITLTAASVVVFAEIHFNPGYLVQAEDRAHRVGQKDSVFVQYLIAKKTADDVMW-------- 611

  Fly  1197 LTHLVVRPGMGGKGANFTKQELDDILRFG-TEDLFKEDDKEEAIHYDDKA---VAELLDRT-NRG 1256
                           |..:|:||.:.:.. :.|.|:..||.. :.::|.|   :||.|.:| :..
 Worm   612 ---------------NMVQQKLDVLGQVSLSSDTFRTADKMH-LRFNDAAQPGIAEYLKKTPDTT 660

  Fly  1257 IEEKESWANEYLSSFKVASYATKEEEEEEETEII 1290
            |:|   |.:..            ||:|:::.|||
 Worm   661 IDE---WEDPV------------EEKEDDDLEII 679

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mi-2NP_001014591.1 CHDNT 138..191 CDD:462357
TNG2 <282..422 CDD:227367
PHD1_CHD_II 380..422 CDD:277006
PHD2_CHD_II 440..482 CDD:277007
CD1_tandem_CHD3-4_like 487..557 CDD:349314
CD2_tandem_CHD3-4_like 610..664 CDD:349309
PLN03142 720..>1234 CDD:215601 133/543 (24%)
DUF1087 <1292..1334 CDD:461922
CHDII_SANT-like 1380..1517 CDD:461920
CHDCT2 1757..1902 CDD:462358
smrc-1NP_741192.1 HARP 118..169 CDD:462166
DEXHc_HARP_SMARCAL1 200..412 CDD:350768 64/250 (26%)
SF2_C_SNF 474..601 CDD:350180 38/127 (30%)
Blue background indicates that the domain is not in the aligned region.

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