DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mi-2 and Aire

DIOPT Version :10

Sequence 1:NP_001014591.1 Gene:Mi-2 / 40170 FlyBaseID:FBgn0262519 Length:1983 Species:Drosophila melanogaster
Sequence 2:NP_033776.1 Gene:Aire / 11634 MGIID:1338803 Length:552 Species:Mus musculus


Alignment Length:392 Identity:86/392 - (21%)
Similarity:124/392 - (31%) Gaps:126/392 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   206 AGQARSVTGDEP-------EEPRSSRSSRNEKPDDIYEEAVEEEEEEEEEEKKPRRKRSGRGKKG 263
            ||...:|....|       ||||::      .|..:..::|  .......:.||.:|..|..:..
Mouse   118 AGPKAAVLPPRPPTKRKALEEPRAT------PPATLASKSV--SSPGSHLKTKPPKKPDGNLESQ 174

  Fly   264 RRPSGKVPTLKIKLLGKRKRDSSDEEQDASGASERDSDLEFERMLQKSDDSADEKEAPVSSKADN 328
            ..|.|.........:.:....:|.:.....||.|       ..::|:..:|...|:. :....:.
Mouse   175 HLPLGNGIQTMAASVQRAVTVASGDVPGTRGAVE-------GILIQQVFESGRSKKC-IQVGGEF 231

  Fly   329 SAPAAQDDGSG------------APVVRKKA---------KTKIGNKFKKKNKLKKTKNFPEGED 372
            ..|...:|.||            .||||.|.         :.|:|    ::..:....:.|....
Mouse   232 YTPNKFEDPSGNLKNKARSGSSLKPVVRAKGAQVTIPGRDEQKVG----QQCGVPPLPSLPSEPQ 292

  Fly   373 GEHEHQDYCEVCQQGGEIILCDTCPRAYHLVCLEPELDEPPEGKWSCPHC--------------- 422
            ...:::|.|.||..|||:|.||.||||:||.||.|.|.|.|.|.|.|..|               
Mouse   293 VNQKNEDECAVCHDGGELICCDGCPRAFHLACLSPPLQEIPSGLWRCSCCLQGRVQQNLSQPEVS 357

  Fly   423 -----------------------------EADGGAA----------------------------- 429
                                         :|...||                             
Mouse   358 RPPELPAETPILVGLRSASEKTRGPSRELKASSDAAVTYVNLLAPHPAAPLLEPSALCPLLSAGN 422

  Fly   430 EEEDDDEHQEFCRVCKDGGELLCCDSCPSAYHTFCLNPPLDTIPDGDWRCPRCSC-----PPLTG 489
            |..........|.||.||.|:|.|..|.:|:|..|..|.....|..:.||..||.     |...|
Mouse   423 EGRPGPAPSARCSVCGDGTEVLRCAHCAAAFHWRCHFPTAAARPGTNLRCKSCSADSTPTPGTPG 487

  Fly   490 KA 491
            :|
Mouse   488 EA 489

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mi-2NP_001014591.1 CHDNT 138..191 CDD:462357
TNG2 <282..422 CDD:227367 44/160 (28%)
PHD1_CHD_II 380..422 CDD:277006 24/41 (59%)
PHD2_CHD_II 440..482 CDD:277007 16/41 (39%)
CD1_tandem_CHD3-4_like 487..557 CDD:349314 2/5 (40%)
CD2_tandem_CHD3-4_like 610..664 CDD:349309
PLN03142 720..>1234 CDD:215601
DUF1087 <1292..1334 CDD:461922
CHDII_SANT-like 1380..1517 CDD:461920
CHDCT2 1757..1902 CDD:462358
AireNP_033776.1 LXXLL motif 1 8..12
HSR 17..104 CDD:460835
LXXLL motif 2 64..68
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 109..177 14/66 (21%)
Nuclear localization signal. /evidence=ECO:0000255 114..134 4/15 (27%)
SAND 198..264 CDD:128554 15/73 (21%)
PHD1_AIRE 300..342 CDD:277014 24/41 (59%)
LXXLL motif 3 414..418 0/3 (0%)
PHD2_AIRE 433..475 CDD:277015 16/41 (39%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 472..514 6/18 (33%)
LXXLL motif 4 520..524
Blue background indicates that the domain is not in the aligned region.

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