DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mi-2 and Chd4

DIOPT Version :10

Sequence 1:NP_001014591.1 Gene:Mi-2 / 40170 FlyBaseID:FBgn0262519 Length:1983 Species:Drosophila melanogaster
Sequence 2:NP_001390521.1 Gene:Chd4 / 107932 MGIID:1344380 Length:1922 Species:Mus musculus


Alignment Length:2037 Identity:1111/2037 - (54%)
Similarity:1374/2037 - (67%) Gaps:249/2037 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 SEEENDDNFQEEEEAQEDNAPAAELSNDSDAPLKPNQNDEDDDYDPEDSRRKKKGKKRKTRKGEE 67
            ||||:.|                .|.|:|..|..| :|:||.|.|..::...|..||:|.:|..:
Mouse    15 SEEEDMD----------------ALLNNSLPPPHP-ENEEDPDEDLSEAETPKLKKKKKPKKPRD 62

  Fly    68 KGRKKKKRKKNE-----------SEEDSDFVQHDEEVEYPSTSK-----RGRKRKEEKQAAKEKE 116
            ....|.||:|.|           |.|..:||:.:|||...|.|:     .|:|:|::....|||:
Mouse    63 PKIPKSKRQKKERLLLCRQLGDSSGEGPEFVEEEEEVALRSDSEGSDYTPGKKKKKKLGPKKEKK 127

  Fly   117 SASSGMPSVED---------------VCSAFSVCNVEIEYSEEELQSLTTYKAFMHHVRPILQKE 166
            |.|......|:               :...:.:.:::..:|||:.::||.||||...|||::..:
Mouse   128 SKSKRKEEEEEEDEDDDSKEPKSSAQLLEDWGMEDIDHVFSEEDYRTLTNYKAFSQFVRPLIAAK 192

  Fly   167 NPKIAAPKLVMLVAAKWREFCESNPHIQQEGGAAGSGGSAGQA---RSVTGDEPEEPRSSRSSRN 228
            |||||..|::|::.||||||..:||.....|.:..:..:|..|   ..||..|...|        
Mouse   193 NPKIAVSKMMMVLGAKWREFSTNNPFKGSSGASVAAAAAAAVAVVESMVTATEVAPP-------- 249

  Fly   229 EKPDDIYEEAVEEEEEEEEEEKKPRRKRSG--RGKKGRRPS-GKVPTLKIKLLG---KRKRDSSD 287
              |..: |..:.:.:.:|.:....|||..|  |....::|. .||..|||||.|   ||||.||:
Mouse   250 --PPPV-EVPIRKAKTKEGKGPNARRKPKGSPRVPDAKKPKPKKVAPLKIKLGGFGSKRKRSSSE 311

  Fly   288 EEQDASGASERDSDLEFERMLQKSDDSADEKEAPVSSKADNSAPAAQDDGSGAPVVRKKAKTKIG 352
                       |.||:.|         :|..:|.::|.:.:....::...|     |||.:|.  
Mouse   312 -----------DDDLDVE---------SDFDDASINSYSVSDGSTSRSSRS-----RKKLRTA-- 349

  Fly   353 NKFKKKNKLKKTKNFPEGEDG-EHEHQDYCEVCQQGGEIILCDTCPRAYHLVCLEPELDEPPEGK 416
             |.|||.:.:.|     ..|| |.:|||||||||||||||||||||||||:|||:|::::.||||
Mouse   350 -KKKKKGEEEVT-----AVDGYETDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGK 408

  Fly   417 WSCPHCEADG-------------------GAAEEEDDDEHQEFCRVCKDGGELLCCDSCPSAYHT 462
            |||||||.:|                   |...||:||.|.||||||||||||||||:|||:||.
Mouse   409 WSCPHCEKEGIQWEAKEDNSEGEEILEEVGGDPEEEDDHHMEFCRVCKDGGELLCCDTCPSSYHI 473

  Fly   463 FCLNPPLDTIPDGDWRCPRCSCPPLTGKAEKIITWRWAQ--------RSNDDGPSTSKGSKNSNS 519
            .||||||..||:|:|.||||:||.|.||.:||:.|:|.|        |..|..|:|.........
Mouse   474 HCLNPPLPEIPNGEWLCPRCTCPALKGKVQKILIWKWGQPPSPTPVPRPPDADPNTPSPKPLEGR 538

  Fly   520 RVREYFIKWHNMSYWHCEWVPEVQLDVHHPLMIRSFQRKYDMEEPPKFEESLDEADTRYKRIQRH 584
            ..|::|:||..||||||.||.|:||::|..:|.|::|||.||:|||..:...||..:|.::    
Mouse   539 PERQFFVKWQGMSYWHCSWVSELQLELHCQVMFRNYQRKNDMDEPPSGDFGGDEEKSRKRK---- 599

  Fly   585 KDKVGMKANDDAEV--LEERFYKNGVKPEWLIVQRVINHRTARDGSTMYLVKWRELPYDKSTWEE 647
                    |.|.:.  :|||||:.|:||||:::.|::||...:.|...||:|||:||||:::||.
Mouse   600 --------NKDPKFAEMEERFYRYGIKPEWMMIHRILNHSVDKKGHVHYLIKWRDLPYDQASWES 656

  Fly   648 EGDDIQGLRQAIDY------YQDLRAVCTSETTQSRSKKSKKGRKSKL-KVEDDEDRPVKHYTPP 705
            |..:||      ||      |.:.|.:...|    ..:..||.:|.|| |:|           .|
Mouse   657 EDVEIQ------DYDLFKQSYWNHRELMRGE----EGRPGKKLKKVKLRKLE-----------RP 700

  Fly   706 PEKPTTDLKKKYEDQPAFLEGTGMQLHPYQIEGINWLRYSWGQGIDTILADEMGLGKTIQTVTFL 770
            ||.||.|...|||.||.:|:.||..|||||:||:||||:||.||.|||||||||||||:||..||
Mouse   701 PETPTVDPTVKYERQPEYLDATGGTLHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFL 765

  Fly   771 YSLYKEGHCRGPFLVAVPLSTLVNWEREFELWAPDFYCITYIGDKDSRAVIRENELSFEEGAIR- 834
            ||||||||.:|||||:.||||::|||||||:||||.|.:||:|||||||:|||||.|||:.||| 
Mouse   766 YSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENEFSFEDNAIRG 830

  Fly   835 GSKVSRL-RTTQYKFNVLLTSYELISMDAACLGSIDWAVLVVDEAHRLKSNQSKFFRILNSYTIA 898
            |.|.||: :....||:|||||||||::|.|.|||||||.|:||||||||:|||||||:||.|::.
Mouse   831 GKKASRMKKEASVKFHVLLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQ 895

  Fly   899 YKLLLTGTPLQNNLEELFHLLNFLSRDKFNDLQAFQGEFADVSKEEQVKRLHEMLGPHMLRRLKT 963
            :|||||||||||||||||||||||:.::|::|:.|..||||::||:|:|:||:|||||||||||.
Mouse   896 HKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEFADIAKEDQIKKLHDMLGPHMLRRLKA 960

  Fly   964 DVLKNMPSKSEFIVRVELSAMQKKFYKFILTKNYEALNSKSGGGSCSLINIMMDLKKCCNHPYLF 1028
            ||.||||||:|.|||||||.||||:||:|||:|:||||::.||...||:|::|||||||||||||
Mouse   961 DVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLF 1025

  Fly  1029 PSAAEEATTAAGGLYEINSLTKAAGKLVLLSKMLKQLKAQNHRVLIFSQMTKMLDILEDFLEGEQ 1093
            |.||.||.....|:|:.::|.:|:|||:||.||||.||...||||||||||||||:||||||.|.
Mouse  1026 PVAAMEAPKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEG 1090

  Fly  1094 YKYERIDGGITGTLRQEAIDRFNAPGAQQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQ 1158
            ||||||||||||.:||||||||||||||||.||||||||||||||||||||||||||||||||||
Mouse  1091 YKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQ 1155

  Fly  1159 AFSRAHRIGQANKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVVRPGMGGKGANFTKQELDDILR 1223
            ||||||||||..||||||||||.|||||:|||||:||||||||||||:|.|..:.:||||||||:
Mouse  1156 AFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVVRPGLGSKTGSMSKQELDDILK 1220

  Fly  1224 FGTEDLFKE-------DDKE----EAIHYDDKAVAELLDRTNRGIEEKE-SWANEYLSSFKVASY 1276
            ||||:|||:       |:||    ..|||||||:..||||.....|:.| ...||||||||||.|
Mouse  1221 FGTEELFKDEATDGGGDNKEGEDSSVIHYDDKAIERLLDRNQDETEDTELQGMNEYLSSFKVAQY 1285

  Fly  1277 ATKE----EEEEEETEIIKQDAENSDPAYWVKLLRHHYEQHQEDVGRSLGKGKRVRKQVNYTDGG 1337
            ..:|    ||||.|.|||||: |:.||.||.|||||||||.|||:.|:||||||:||||||.|| 
Mouse  1286 VVREEEMGEEEEVEREIIKQE-ESVDPDYWEKLLRHHYEQQQEDLARNLGKGKRIRKQVNYNDG- 1348

  Fly  1338 VVAADTTRDDSNWQDNGSEYNSEYSAGSDEDGGDDDFDDQNGAERKAKRRLERRD-DRPLPPLLA 1401
                  :::|.:|||:.|:..|:||..|:|  ||:|||:::.|.|:..|:..|.| |:|||||||
Mouse  1349 ------SQEDRDWQDDQSDNQSDYSVASEE--GDEDFDERSEAPRRPSRKGLRNDKDKPLPPLLA 1405

  Fly  1402 RVGGNIEVLGFNARQRKSFLNAIMRYGMPPQDAFNSQWLVRDLRGKSERNFKAYVSLFMRHLCEP 1466
            |||||||||||||||||:||||||||||||||||.:||||||||||||:.|||||||||||||||
Mouse  1406 RVGGNIEVLGFNARQRKAFLNAIMRYGMPPQDAFTTQWLVRDLRGKSEKEFKAYVSLFMRHLCEP 1470

  Fly  1467 GADNAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEHINGYYSMPELILKPCEPVRSALKQ 1531
            |||.|||||||||||||||||||||||||||||||||||||:||.:|||||     ..|....|.
Mouse  1471 GADGAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEHVNGRWSMPEL-----AEVEENKKM 1530

  Fly  1532 DVAALEAPPTGGNVDKSATTSNSVTPATSAAPSPAPASEKGEDKDKDSEKEKDKTSAEKSEVKQ- 1595
            ......:|.|     .:.:|.....|.|   |:|.|.:|.|...:::|.||::.|..|| |||. 
Mouse  1531 SQPGSPSPKT-----PTPSTPGDTQPNT---PAPVPPAEDGIKIEENSLKEEESTEGEK-EVKST 1586

  Fly  1596 --EQEAEEDKKPGDVKQENPV-----EEAAGDTKPSDAEVKTEVAKTEPKEETKDPEVKEEPKTE 1653
              |...|..:.|.......|.     |:.....:|.:.|.|.|  |.|.||.|::|     .:||
Mouse  1587 APEATVECAQPPAPAPATAPATATAPEDDKAPAEPPEGEEKVE--KAEVKERTEEP-----METE 1644

  Fly  1654 EK---EKEKVDDKKPIPPTTVIDDDDDDVMIVKEDGELEKPSASSPKDQKAVAAATSAATGATGK 1715
            .|   |.|||::|..:..|.::.:|.::....:|..::...:..:|||.            :..|
Mouse  1645 AKGTTEVEKVEEKSAVDLTPIVVEDKEEKKEEEEKKDVMLQNGETPKDL------------SDEK 1697

  Fly  1716 GAEDSLEVLKRKFMFNIADGGFTELHTLWLNEEKAA-VPGREYEIWHRRHDYWLLAGIVTHGYGR 1779
            ..::|    |::||||||||||||||:||.|||:|| |..:.||||||||||||||||:.|||.|
Mouse  1698 QKKNS----KQRFMFNIADGGFTELHSLWQNEERAATVTKKTYEIWHRRHDYWLLAGIINHGYAR 1758

  Fly  1780 WQDIQNDIRFAIINEPFKMDVGKGNFLEIKNKFLARRFKLLEQALVIEEQLRRAAYLNLAQDPSH 1844
            |||||||.|:||:|||||.::.:|||||||||||||||||||||||||||||||||||:::||||
Mouse  1759 WQDIQNDPRYAILNEPFKGEMNRGNFLEIKNKFLARRFKLLEQALVIEEQLRRAAYLNMSEDPSH 1823

  Fly  1845 PAMSLNARFAEVECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKSDVSRLPATLARI 1909
            |:|:||.|||||||||||||||||||:||||||||||||||.||||||||||:||:|||||:|||
Mouse  1824 PSMALNTRFAEVECLAESHQHLSKESMAGNKPANAVLHKVLKQLEELLSDMKADVTRLPATIARI 1888

  Fly  1910 PPVAQRLQMSERSILSRLAATA 1931
            ||||.|||||||:||||||..|
Mouse  1889 PPVAVRLQMSERNILSRLANRA 1910

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mi-2NP_001014591.1 CHDNT 138..191 CDD:462357 25/52 (48%)
TNG2 <282..422 CDD:227367 61/140 (44%)
PHD1_CHD_II 380..422 CDD:277006 34/41 (83%)
PHD2_CHD_II 440..482 CDD:277007 32/41 (78%)
CD1_tandem_CHD3-4_like 487..557 CDD:349314 30/77 (39%)
CD2_tandem_CHD3-4_like 610..664 CDD:349309 24/59 (41%)
PLN03142 720..>1234 CDD:215601 386/522 (74%)
DUF1087 <1292..1334 CDD:461922 30/41 (73%)
CHDII_SANT-like 1380..1517 CDD:461920 118/137 (86%)
CHDCT2 1757..1902 CDD:462358 123/144 (85%)
Chd4NP_001390521.1 CHDNT 164..217 CDD:462357 25/52 (48%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 243..360 41/155 (26%)
KIKL. /evidence=ECO:0000250|UniProtKB:Q14839 295..298 2/2 (100%)
PHD1_CHD_II 372..414 CDD:277006 34/41 (83%)
PHD2_CHD_II 451..493 CDD:277007 32/41 (78%)
CD1_tandem_CHD3-4_like 498..576 CDD:349314 30/77 (39%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 510..537 6/26 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 578..603 9/36 (25%)
CD2_tandem_CHD3-4_like 619..673 CDD:349309 24/59 (41%)
PLN03142 724..>1281 CDD:215601 403/556 (72%)
DEXHc_CHD4 726..957 CDD:350814 167/230 (73%)
DEAH box 873..876 2/2 (100%)
DUF1087 1302..1345 CDD:461922 32/43 (74%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1344..1401 26/65 (40%)
CHDII_SANT-like 1381..1521 CDD:461920 118/139 (85%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1525..1701 50/203 (25%)
Required for interaction with PCNT. /evidence=ECO:0000250 1577..1922 209/358 (58%)
CHDCT2 1736..1881 CDD:462358 123/144 (85%)

Return to query results.
Submit another query.