DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mi-2 and ercc6l

DIOPT Version :10

Sequence 1:NP_001014591.1 Gene:Mi-2 / 40170 FlyBaseID:FBgn0262519 Length:1983 Species:Drosophila melanogaster
Sequence 2:XP_002936822.1 Gene:ercc6l / 100135235 XenbaseID:XB-GENE-988849 Length:1361 Species:Xenopus tropicalis


Alignment Length:1365 Identity:319/1365 - (23%)
Similarity:518/1365 - (37%) Gaps:407/1365 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   643 STWEEEGDDIQGLR---QAIDYYQDLRAVCTSETTQSRSKKSKK--GRKSKLKVEDDEDRPVKHY 702
            ||...|..|:...|   :.::.|:........|.|....:|:.|  .:.|::...|...|.::..
 Frog     8 STGSNEPGDLHRSRVEPEQVERYELYVKKAKQEATSGNLEKAIKFFVKASEIHPSDKIHRRIEKL 72

  Fly   703 TPPPEKPTTDLKKKYEDQPAFLEGTGM--------QLHPYQIEGINWLRYSWGQG-IDTILADEM 758
            ....|:  .||::..:|....:..:|:        :|..:|.||:.:|...:..| ...||||:|
 Frog    73 KEALEE--LDLQEDADDDFVDVLNSGLTIYNELYNKLFEHQKEGVAFLYSLYRDGRKGGILADDM 135

  Fly   759 GLGKTIQTVTFLYSLYKEGHCRGPFLVAVPLSTLVNWEREFELWAPDFYCITYIGDKDSRAVIRE 823
            |||||||.:.||..::.....:...|| :|.:.:.||.:||:.|.|.               :|.
 Frog   136 GLGKTIQVIGFLSGMFDSELIKYVLLV-MPTTLISNWVKEFQKWTPG---------------LRV 184

  Fly   824 NELSFEEGAIRGSKVSRLRTTQYKFNVLLTSYELISMDAACLGS-----IDWAVLVVDEAHRLKS 883
            .|.   .|..:..:...|...|....:::|:|:::..:...|.:     .:|..:::||||::|:
 Frog   185 AEF---HGTSKKERTRNLEKIQRMSGIIITTYQMLINNWQQLATYNGREFEWDYIILDEAHKIKT 246

  Fly   884 NQSKFFRILNSYTIAYKLLLTGTPLQNNLEELFHLLNFLSRDKFNDLQAFQGEFADVSK------ 942
            :.:|..:..:|.....::||||||:||||.|::.|.:|          |.||.....||      
 Frog   247 SSTKTAKSCHSIPAKNRILLTGTPIQNNLREMWALYDF----------ACQGTLLGTSKTFKMEY 301

  Fly   943 EEQVKRLHE--------------------MLGPHMLRRLKTDVLK---------------NMPS- 971
            |..:.|..|                    ::.|:.|||.|:||..               :||| 
 Frog   302 ENPITRAREKDATPGEKALGLKISENLMKIIQPYFLRRTKSDVQNKKTERTRAQDTSQGPSMPSL 366

  Fly   972 --KSEFIVRVELSAMQKKFY-KFILTKNYEALNSKSGGGSCSLINIMMDLKKCCNHPYLFPSAAE 1033
              |::|||.|.||.:|:..| |||.....:.|...:......| ||   |||.|:||.|..:.|.
 Frog   367 TRKNDFIVWVYLSTIQEDVYRKFISLDQIKELLMTTRSPLAEL-NI---LKKLCDHPRLLSARAC 427

  Fly  1034 EATTAAGGLYEINS-----------------LTKAAGKLVLLSKMLKQLKAQNHRVLIFSQMTKM 1081
            ......|..|..|.                 |.:.:|||:||..:|.:||.:.||.|:|||..||
 Frog   428 IQLGLEGDDYHSNEEGDHELVTKFDHLSDEILIEESGKLLLLIDLLHKLKEEGHRTLVFSQSRKM 492

  Fly  1082 LDILEDFLEGEQYKYERIDGGITGTLRQEAIDRFNAPGAQQFVFLLSTRAGGLGINLATADTVII 1146
            ||:::..|:.:.:|..||||.:....|::.|..|.: .....|.||:|:.||:|:.|..||.|:|
 Frog   493 LDMIDRILQNKNFKVMRIDGTVALPEREKRISIFQS-NNNYSVLLLTTQVGGVGLTLTAADRVVI 556

  Fly  1147 YDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVVRPGMGGKG- 1210
            :|..|||..|.||..||:||||...|:|||.:|..:|||::    .|:.:....::|...|.|. 
 Frog   557 FDPSWNPATDAQAVDRAYRIGQQENVVIYRLITCGTVEEKI----YRRQIFKESLIRQTTGDKKN 617

  Fly  1211 --ANFTKQELDDILRFGTEDLFKEDDKEEA--IHYDDKAVAELLDRTNR--------GIEEKE-S 1262
              ..|:||||.::  |..||......:.:.  :|..::.....||....        ||.:.: .
 Frog   618 PFRYFSKQELKEL--FSLEDTRTSSTQIQLQNMHAAERKTDTRLDEHIAYLHTLQIFGISDHDLV 680

  Fly  1263 WANEYLSSFKVASYATK-----EEEEEEETEIIKQDAE----------NSDPAYWVKLLRHHYEQ 1312
            :||| |||.:...|..:     |:..::..|:::.:::          .|....||:.:....|:
 Frog   681 YANE-LSSQEDNEYEDEHGQYIEQRVQKAHELVQMESQLNEQLMDQIRKSTEGAWVRQISTAPEK 744

  Fly  1313 HQEDVGRSLGKGKR-----VRKQVNYTDGGVVAADTT----RDDSNWQD-------------NGS 1355
            .::   .||.:.|:     |...:...|.|.|:...|    .|.|..:|             ||:
 Frog   745 PKK---TSLPREKQYSSPPVTVDLTEDDVGEVSCHMTSLIINDSSGEEDVDLPAAPFSIKPLNGN 806

  Fly  1356 EYNSEYSAGSD---------EDGGDDDFDDQNGAERKAKRRLERRDDR-----------PLPPLL 1400
            .::.:.|..::         :...:..||.|..........:|..|||           |.||:.
 Frog   807 SHSGDTSHAAEKPLKLENSLQQSHEKIFDKQEEIIVSDSSVIETDDDRNTPSLKGDWSKPSPPVT 871

  Fly  1401 ARV-------GGNIEVLGFN----ARQRKSFLNAIMRYGMPPQDAFNSQWLVRDLRGKSERN--F 1452
            ..:       |..|.:....    .:.|.||.|....:         .|..|.|    ::.|  .
 Frog   872 EHISYSHPAEGEPIPIWHVEPEVCKKLRHSFGNRTEEF---------QQSCVTD----TDMNDGL 923

  Fly  1453 KAYVSLFMRHL----------------CEPGADNAE---------------TFADGV----PREG 1482
            :|.:|....||                |....:..|               ...|.|    .|.|
 Frog   924 EASLSASKSHLPCDFNLVLDDSMERDECNASMEGLEGAMEISAAADKNAILVLEDSVENTSQRNG 988

  Fly  1483 L---------------------SRQHVL--TRIGVMSLIR-----------------KKVQEFEH 1507
            |                     |:::||  :..|.|.::.                 |..||.::
 Frog   989 LEISMVSENGDMVVLDSSMANTSQRNVLGTSNKGAMLVLENSTEDISQEGNISETSMKLEQEKKN 1053

  Fly  1508 INGYYSMPELILKPCEPVRSALKQDVAALEAPPTGGNVDKSATTSNSVTPATSAAPSPAPASEKG 1572
            :|......::.:|.|.      |||   .:..|..|..|:.:...|.|:               |
 Frog  1054 LNESMETADVHIKDCS------KQD---FKEYPLEGEEDEKSFHINEVS---------------G 1094

  Fly  1573 EDKDK-------DSEKE------KDKTSA---EKSEVKQEQEAEEDKK-------PG--DVKQEN 1612
            .|.::       |||.|      |.||:.   ..||.:.....:|::|       |.  .:....
 Frog  1095 TDNNELQASVHTDSEDELEYFVSKKKTARRIYSDSEGESSVYVDENEKVFSPTSSPSVKGITAST 1159

  Fly  1613 P---------------------------------VEEAA--GDTKPSDA---------EVKTEVA 1633
            |                                 |||||  .||..|.:         |..|..|
 Frog  1160 PKLNKSISDSLFPLRQSLGRRRSIASRRSLVHVAVEEAADVNDTIVSSSSEESGEEEDEFVTSEA 1224

  Fly  1634 KTEPKEETKDPEVKEEPKTEEKEKEKVDDKKPIPPTTVI---DDDDDDVMIVKEDGELEKPSASS 1695
            |...:||:.:||  |||..|...:|:          :::   :|.:.|..:||...:.|:...||
 Frog  1225 KEADEEESVEPE--EEPAGETLPQEE----------SIVQHSEDYESDSFVVKSSFDQEEDDCSS 1277

  Fly  1696  1695
             Frog  1278  1277

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mi-2NP_001014591.1 CHDNT 138..191 CDD:462357
TNG2 <282..422 CDD:227367
PHD1_CHD_II 380..422 CDD:277006
PHD2_CHD_II 440..482 CDD:277007
CD1_tandem_CHD3-4_like 487..557 CDD:349314
CD2_tandem_CHD3-4_like 610..664 CDD:349309 6/23 (26%)
PLN03142 720..>1234 CDD:215601 177/592 (30%)
DUF1087 <1292..1334 CDD:461922 8/56 (14%)
CHDII_SANT-like 1380..1517 CDD:461920 37/235 (16%)
CHDCT2 1757..1902 CDD:462358
ercc6lXP_002936822.1 LapB <21..123 CDD:442196 19/103 (18%)
HepA <106..613 CDD:440319 166/544 (31%)
DEXHc_ERCC6L 107..339 CDD:350759 68/260 (26%)
MPH1 <482..753 CDD:440728 83/281 (30%)
Spy 1305..>1359 CDD:443119
Blue background indicates that the domain is not in the aligned region.

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