DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab8 and Rab40

DIOPT Version :10

Sequence 1:NP_524172.1 Gene:Rab8 / 40168 FlyBaseID:FBgn0262518 Length:207 Species:Drosophila melanogaster
Sequence 2:NP_727611.1 Gene:Rab40 / 32195 FlyBaseID:FBgn0030391 Length:265 Species:Drosophila melanogaster


Alignment Length:176 Identity:74/176 - (42%)
Similarity:105/176 - (59%) Gaps:13/176 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MAKTYDYLFKLLLIGDSGVGKTCILFRFSEDAFNTTFISTIGID----------FKIRTIELDNK 55
            |.|.||||.|:||:|||.|||..||....:.:..:.|.|  |.|          :|..||.|:.|
  Fly     4 MTKDYDYLLKVLLVGDSDVGKHEILSNLEDPSTESPFCS--GNDCTSHILQTVAYKTTTILLEGK 66

  Fly    56 KIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITQEKSFENIKNWIRNIEENASADVEKMLLG 120
            ::|||:|||:||.||.||..:|.|||.||:||||||.:.||:.|..|::.::|:|.. :.|:|:|
  Fly    67 RVKLQLWDTSGQGRFCTIIRSYSRGAQGIILVYDITNKWSFDGIDRWLKEVDEHAPG-IPKVLVG 130

  Fly   121 NKCELTDKRQVSKERGEQLAIEYGIKFMETSAKASINVEEAFLTLA 166
            |:..|..||||:.::.|..|....:...|.|...:.|:.|:|..||
  Fly   131 NRLHLAFKRQVAAKQAETYASRNNMSCFEISPLCNFNIRESFCELA 176

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab8NP_524172.1 Rab8_Rab10_Rab13_like 6..172 CDD:206659 71/171 (42%)
Rab40NP_727611.1 P-loop containing Nucleoside Triphosphate Hydrolases 6..265 CDD:476819 73/174 (42%)
SOCS 192..234 CDD:470605
Blue background indicates that the domain is not in the aligned region.

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