DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment Deaf1 and Samd11

DIOPT Version :9

Sequence 1:	NP_001262069.1	Gene:	Deaf1 / 40164	FlyBaseID:	FBgn0013799	Length:	576	Species:	Drosophila melanogaster
Sequence 2:	XP_038965039.1	Gene:	Samd11 / 102549710	RGDID:	1310271	Length:	844	Species:	Rattus norvegicus

Alignment Length:	199	Identity:	59/199 - (29%)
Similarity:	91/199 - (45%)	Gaps:	47/199 - (23%)

- Green bases have known domain annotations that are detailed below.

  Fly   222 QIRCKTTCAELYRSKLGSGGRGRCVKYKDKWHTPSEFEHVCGRGSSKDWKRSIKYGGKSLQSLID 286
            ::.|....|.||..||..|.:|..::::.:|.||:||:.|.||.::|||||||::.||||::|:.
  Rat   117 EVECGDNRALLYVRKLCQGSKGPSIRHRGEWLTPNEFQFVSGRETAKDWKRSIRHKGKSLKTLMS 181

  Fly   287 EGTLTPHATNCSCTVCCDDEAGESASGPV---RL-------FTPYKRRKRNQT------DLDME- 334
            :|.|..|...|.|..|       ..|.||   ||       ..|....|:.:|      |.|.:
  Rat   182 KGILRVHPPICDCPGC-------RISSPVNRGRLADKRTVTLPPTHALKKERTPSFSASDGDSDG 239

  Fly   335 SGP-------------------KRKRNTHHSNNNNSNTNNNNTSGSGANNCVDVTAAVAAATASV 380
            |||                   ||:.:||.    :.|.:...||.|..|:...:.::|..:...|
  Rat   240 SGPACGQQLSLKQEDDPHFHIMKRRVHTHW----DVNISFRETSCSQDNDLPTLISSVHRSRCLV 300

  Fly   381 VDEN 384
            :.|:
  Rat   301 MPEH 304

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
Deaf1	NP_001262069.1	SAND	219..291	CDD:128554	29/68 (43%)
Deaf1	NP_001262069.1	zf-MYND	521..557	CDD:280009
Samd11	XP_038965039.1	SAND	113..185	CDD:396076	29/67 (43%)
Samd11	XP_038965039.1	SAM_Samd7,11	704..771	CDD:188978
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG4333
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.900