DRSC/TRiP Functional Genomics Resources

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Protein Alignment Kap-alpha1 and ABAP1

DIOPT Version :10

Sequence 1:NP_524167.1 Gene:Kap-alpha1 / 40160 FlyBaseID:FBgn0024889 Length:543 Species:Drosophila melanogaster
Sequence 2:NP_196810.5 Gene:ABAP1 / 831145 AraportID:AT5G13060 Length:737 Species:Arabidopsis thaliana


Alignment Length:470 Identity:99/470 - (21%)
Similarity:184/470 - (39%) Gaps:70/470 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    88 SGAQPSVINEEMIQMLFSGRENEQLEATQKFRKLL-SRDPNPPIEEVIQKGIVP-QFVTFLR--- 147
            |...|.:.|...::.....:...:|.|....|||. :.|..|.:.::|.....| ..|..:|   
plant    17 SSTAPVISNHPPMENHPKRQRTTRLAARNLKRKLSHNTDGAPIVTQLIDIDDEPIDLVVAIRRHV 81

  Fly   148 ---NSANATLQF------EAAWTLTNIASGTSQQTKVVIEAGAVPIFIDLLSSP----------- 192
               ||:.:...|      |||..:.::|. ..:..::::|.||:|..:..|.||           
plant    82 EVLNSSFSDPDFDHEAVKEAAADIADLAK-IDENVEIIVENGAIPALVRYLESPLVVCGNVPKSC 145

  Fly   193 HDDVQEQAVWALGNIAGDSPMCRDHLLGSGILEPLLHVLSNSDRITMIRNAVWTLSNLCRGKSPP 257
            ...:::....|||.||...|..:..::.:|.:.|.:.:|..                  ||:...
plant   146 EHKLEKDCALALGLIAAIQPGYQQLIVDAGAIVPTVKLLKR------------------RGECGE 192

  Fly   258 ADFAKISHGLPILARLLKYTDADVLSDTCWAIGYLSDGPNDKIQAVIDAGVCRRLVELLLHPQQN 322
            ..||.     .::.|.     ||::::..      .|.|..|....::.|:. .|||||..|...
plant   193 CMFAN-----AVIRRA-----ADIITNIA------HDNPRIKTNIRVEGGIA-PLVELLNFPDVK 240

  Fly   323 VSTAALRAVGNIVTGDDQQTQVILGYNALTCISHLLHSTAETIKKESCWTISNIAAGNREQIQAL 387
            |..||..|:..:...:|:....|:..|||..:..:|.|...|:..|:...|.|:...:.:..:.:
plant   241 VQRAAAGALRTVSFRNDENKSQIVELNALPTLVLMLQSQDSTVHGEAIGAIGNLVHSSPDIKKEV 305

  Fly   388 INANIFPQLMVIMQTAEFKTRKEAAWAITNATSSGTHEQIHYLVQVGCVPPMCDFLTVVDSDIVQ 452
            |.|.....::.::.:...:|::|||..|....:..:..::| :.|.|.:.|:...|...|..:|:
plant   306 IRAGALQPVIGLLSSTCLETQREAALLIGQFAAPDSDCKVH-IAQRGAITPLIKMLESSDEQVVE 369

  Fly   453 VALNALENILKAGEKFQTRPNPYAITIEECGGLDKIEYLQAHENRDIYHKSFYIIEQYFGNEEED 517
            ::..||      |...|...|...|.  ..||:..:..|...:...:.|.:.:.:.....|||..
plant   370 MSAFAL------GRLAQDAHNQAGIA--HRGGIISLLNLLDVKTGSVQHNAAFALYGLADNEENV 426

  Fly   518 SRVAPVAGTQQFEFD 532
            :......|.|:.:.|
plant   427 ADFIKAGGIQKLQDD 441

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kap-alpha1NP_524167.1 SRP1 1..543 CDD:227396 99/470 (21%)
armadillo repeat 133..165 CDD:293788 10/44 (23%)
armadillo repeat 173..209 CDD:293788 11/46 (24%)
armadillo repeat 215..250 CDD:293788 3/34 (9%)
armadillo repeat 267..292 CDD:293788 3/24 (13%)
armadillo repeat 300..336 CDD:293788 11/35 (31%)
armadillo repeat 342..376 CDD:293788 9/33 (27%)
armadillo repeat 384..421 CDD:293788 7/36 (19%)
armadillo repeat 427..461 CDD:293788 9/33 (27%)
ABAP1NP_196810.5 SRP1 17..440 CDD:227396 98/467 (21%)
armadillo repeat 117..160 CDD:293788 10/42 (24%)
armadillo repeat 221..252 CDD:293788 11/31 (35%)
armadillo repeat 260..296 CDD:293788 10/35 (29%)
armadillo repeat 302..333 CDD:293788 6/30 (20%)
armadillo repeat 344..378 CDD:293788 10/40 (25%)
armadillo repeat 385..416 CDD:293788 5/32 (16%)
HEAT repeat 423..459 CDD:293787 5/19 (26%)
armadillo repeat 500..534 CDD:293788
BTB_POZ_ARIA_plant 555..670 CDD:349661
BACK 664..727 CDD:475122
Blue background indicates that the domain is not in the aligned region.

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