DRSC/TRiP Functional Genomics Resources

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Protein Alignment SREBP and Srebf1

DIOPT Version :10

Sequence 1:NP_524166.2 Gene:SREBP / 40155 FlyBaseID:FBgn0261283 Length:1113 Species:Drosophila melanogaster
Sequence 2:NP_035610.1 Gene:Srebf1 / 20787 MGIID:107606 Length:1134 Species:Mus musculus


Alignment Length:302 Identity:63/302 - (20%)
Similarity:107/302 - (35%) Gaps:101/302 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 CLPSTS------------------TTGLVFPTNYGVN--AINASSGFHPAVDASGSVAAGVKQEA 52
            |||..|                  |.||:.|.: ||:  |:..|...:...:.|.....|..|..
Mouse    25 CLPPVSCTTCPQKCRCEDLQFYCDTQGLLAPPD-GVDKGALGLSLRHNSISELSSDQFFGFTQLT 88

  Fly    53 ALVMD----WSVEEQYVLENGLAKLKD----EPKISKYVKIAATLPDKTVRDVALRCRWMTRKRR 109
            .|.:|    .:|.|...  .||.||||    ..:|:|       ||:.|...:.           
Mouse    89 WLHLDHNQITTVHEDAF--QGLYKLKDLNLSSNRITK-------LPNTTFIHLI----------- 133

  Fly   110 KREDNNAAKNISTRKVVDTSPELNMLSNVPQQNALYVLNNMCHST---------RTPFEGLSDAV 165
                |....::|..::....|||  ...:.:...|::.:|...:|         ...:.|||:..
Mouse   134 ----NLQILDLSFNQMTALEPEL--FHGLRKLQILHLRSNSLRTTPVRAFWDCRSLEYLGLSNNR 192

  Fly   166 MDLLQQNAQAFSQISYNLSACKLQDN----ISLFHQAR--------------NNISAIL----TD 208
            :..|.:|  .|:.: ..|....|:.|    |:|.|..|              ||:::.:    |.
Mouse   193 LRSLARN--GFAGL-IKLRELHLEHNHLTKINLAHFPRLVALQFLYLQWNKINNLTSTMEWKWTT 254

  Fly   209 MKEM-----------PGIMSRMPALPVSIND-DLASNLLSST 238
            ::::           |.:...:|:|.:.:.| :..|||.|.|
Mouse   255 LEKLDLTGNEIRVLIPEVFETLPSLKILLLDNNKLSNLDSQT 296

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SREBPNP_524166.2 PAT1 <55..>229 CDD:401645 42/224 (19%)
bHLHzip_SREBP 279..351 CDD:381400
Srebf1NP_035610.1 Transcriptional activation (acidic). /evidence=ECO:0000250|UniProtKB:P36956 1..60 9/35 (26%)
9aaTAD. /evidence=ECO:0000250|UniProtKB:P36956 27..35 2/7 (29%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 46..73 8/27 (30%)
Atrophin-1 109..>217 CDD:460830 26/134 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 130..149 2/33 (6%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 170..195 4/24 (17%)
Interaction with LMNA. /evidence=ECO:0000269|PubMed:11929849 227..487 13/70 (19%)
bHLHzip_SREBP1 313..384 CDD:381491
Leucine-zipper 367..388
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 415..468
COG3899 <562..1052 CDD:443106
Blue background indicates that the domain is not in the aligned region.

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