DRSC/TRiP Functional Genomics Resources

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Protein Alignment serp and Cda9

DIOPT Version :10

Sequence 1:NP_730444.1 Gene:serp / 40150 FlyBaseID:FBgn0260653 Length:541 Species:Drosophila melanogaster
Sequence 2:NP_611192.1 Gene:Cda9 / 36934 FlyBaseID:FBgn0034197 Length:397 Species:Drosophila melanogaster


Alignment Length:382 Identity:127/382 - (33%)
Similarity:197/382 - (51%) Gaps:38/382 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   168 APPCDPAVCVLPDCFCSEDGTSIP-GDLPAKD--VPMMITITFDDAINNNNIELYKEIFKDRKNP 229
            |.||.|:.|.||||.||:  .::| .....|:  :|..:|||||||:|..|...|:.:|....||
  Fly    39 AEPCKPSKCKLPDCRCSD--AALPTSKFQGKENQIPQFVTITFDDAVNAVNFAQYELLFDGLINP 101

  Fly   230 NGCSIKATYFVSHKYTNYSAVQETARKGHEIAVHSITHNDEERFWSNATVDDWAKEMAGMRIITE 294
            :||....|:|:||:||:|..|....|.|||||:||:||.|...:|.:|.|....:|......:.|
  Fly   102 DGCGAAGTFFLSHEYTDYVRVNALYRAGHEIALHSVTHGDGTDYWRSADVPTIEREFGAQLKMLE 166

  Fly   295 KFANITDNSVVGVRAPYLRVGGNNQFTMMEEQAFLYDST-ITAPLSNPPLWPYTMYFRMPHRCHG 358
            .||.:....:.|:|.|:|::.|||.|.........|||: .|....:|.:||||:.::....|  
  Fly   167 TFAKVNPKKIQGMRLPFLQISGNNTFEAARRLGLTYDSSWPTQKFKDPAMWPYTLDYKSKQDC-- 229

  Fly   359 NLQSCPTRS-HAVWEMVMNELDRREDPVNDEYLPGCAMVDSC-----SNILTGDQFYNFLNHNFD 417
            .:..||..| ...|   :|.:....|  .:.|  .|:|:|:|     .::   |:.::::..||:
  Fly   230 QIGPCPEASIPGFW---VNPMVTWTD--TEGY--SCSMIDACVYPPEDDM---DELFDWMMENFN 284

  Fly   418 RHYDQNRAPLGLYFHAAWLKNNPEFLDAFLYWIDEILANHNDVYFVTMTQVIQWMQNPRTISEVK 482
            |||..||||.|:|.||||......:..||..:|:. |..::||||..:::::::::.|...|..|
  Fly   285 RHYLGNRAPFGMYLHAAWFSRGRNYFGAFKKFINH-LNTYSDVYFTGISRMLEYVRKPTLGSPFK 348

  Fly   483 NFE--PWREKCVVEGKPACWVPNTCKLTSKEVPGETINLQTCVRCPNNYPWVSDPTG 537
            :..  |..|...|:    |.|       .|...||...:..|.:||:.|||:.:|.|
  Fly   349 DCPDLPEAECRAVQ----CHV-------QKMSTGEERYMTVCDKCPSVYPWLDNPLG 394

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
serpNP_730444.1 CBM_14 48..105 CDD:426342
LDLa 125..159 CDD:238060
CE4_CDA_like_1 200..475 CDD:200596 95/281 (34%)
Cda9NP_611192.1 CE4_CDA_like_2 72..341 CDD:200597 95/281 (34%)
Blue background indicates that the domain is not in the aligned region.

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