DRSC/TRiP Functional Genomics Resources

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Protein Alignment serp and lgx-1

DIOPT Version :10

Sequence 1:NP_730444.1 Gene:serp / 40150 FlyBaseID:FBgn0260653 Length:541 Species:Drosophila melanogaster
Sequence 2:NP_001360720.1 Gene:lgx-1 / 180825 WormBaseID:WBGene00002983 Length:1754 Species:Caenorhabditis elegans


Alignment Length:566 Identity:181/566 - (31%)
Similarity:263/566 - (46%) Gaps:115/566 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 LRYKRQATTEETKKEESFEKELCKDKDAGEWFRLVAGEGDNC---RDVIQCTSSGLQAIR----- 82
            :|...|..::|.|.:.:...|.||:   ||   :.|| |..|   |....|.:..: |||     
 Worm  1247 IRQNGQCISKECKHKVAKVGETCKN---GE---ICAG-GSICDYDRKRCICAAQHV-AIRGICKQ 1303

  Fly    83 --CPAGLYFDIEKQTCDWKESVKNCKSKNKERRVKPLLHTDEPLCQDGFLACGDGNCIERGL--- 142
              .||   |.....||..:|   .|              |....|.:|...|.|.:..|.|.   
 Worm  1304 KSAPA---FAAPGDTCSMRE---KC--------------TGGATCFEGMCTCDDHHFAEDGYCRP 1348

  Fly   143 ---------FCNGEKDCSDGSDENTCDIDNDPNRAPPCDPAVCVLPDCFCSEDGTSIPGDLPAKD 198
                     |.||.     |...::..:.| ..||..|:.|.|.||:|||:|:|...||.|...:
 Worm  1349 IEARSSKVQFVNGA-----GLRFSSMQVPN-RQRAQACNEAECKLPNCFCTENGRRAPGGLRPDE 1407

  Fly   199 VPMMITITFDDAINNNNIELYKEIFKD--RKNPNGCSIKATYFVSHKYTNYSAVQETARKGHEIA 261
            .|..:.:|||||:|......||::|::  .||||||.:|||:|:||::|||.||....:|..|||
 Worm  1408 TPQFVVLTFDDAVNGKTFSDYKKLFENDVLKNPNGCDVKATFFISHEWTNYDAVNWLVQKNMEIA 1472

  Fly   262 VHSITHNDEERFWSNATVDDWAKEMAGMRIITEKFANITDNSVVGVRAPYLRVGGNNQFTMMEEQ 326
            .:||:|...|    ||..:.|..||.|.|.|..||....:..:||:|:|.|.:||:|||.||...
 Worm  1473 SNSISHESLE----NANTNRWLNEMDGQRRILAKFGGAPEEEIVGIRSPQLALGGDNQFEMMIGA 1533

  Fly   327 AFLYDSTITAPLSNP-----PLWPYTMYFRMPHRCHGNLQSCPTRSH-AVWEMVMNELDRREDPV 385
            .||:|::::|   ||     |.||.||.:::...|  |..|||..|. .||.:          |:
 Worm  1534 EFLWDNSMSA---NPGIHGEPFWPQTMDYQVAWDC--NEASCPKSSFPGVWSV----------PL 1583

  Fly   386 NDEYLPGCAMVDSC--SNIL--------TGDQFYNFLNHNFDRHYDQNRAPLGLYFHAAWLK--N 438
            |..|....:.:||.  |::|        |.|:....:..||:|.|..||||..|..:|.:|:  .
 Worm  1584 NQFYGSYMSQIDSFRRSSMLRAAVDLNNTVDELEEIITRNFERSYSANRAPYVLSLNADFLQLGG 1648

  Fly   439 NPEFLDAFLYWIDEILANHNDVYFVTMTQVIQWMQNPRTISEVKNFEPWREKCVVEGKP------ 497
            :.:.:.|...:::.:.| ..|||.||:.|:|.||:.|..|||:|:     .|.|  |.|      
 Worm  1649 HNKGMKAVQKFLNRMSA-QKDVYIVTIKQLIDWMKRPVPISEMKS-----SKAV--GCPITLSFN 1705

  Fly   498 ------ACWVPNTCKLTSKEVPGETINLQTCVRCPNNYPWVSDPTG 537
                  .|.:||.|..::..:..:.....||:.||..|||:.:|.|
 Worm  1706 RNPSLSTCDIPNKCLYSTPSLSSQEHQFLTCLPCPTMYPWLENPAG 1751

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
serpNP_730444.1 CBM_14 48..105 CDD:426342 19/66 (29%)
LDLa 125..159 CDD:238060 10/45 (22%)
CE4_CDA_like_1 200..475 CDD:200596 107/294 (36%)
lgx-1NP_001360720.1 EB 322..382 CDD:460294
PHA02682 <388..>493 CDD:177464
EB 565..620 CDD:460294
EB 609..666 CDD:460294
EB <718..757 CDD:460294
EB 911..967 CDD:460294
EB 956..1020 CDD:460294
EB 1009..1083 CDD:460294
EB <1215..1253 CDD:460294 1/5 (20%)
EB 1242..1301 CDD:460294 18/61 (30%)
EB 1290..1346 CDD:460294 18/76 (24%)
CE4_CDA_like_1 1409..1684 CDD:200596 107/294 (36%)
Blue background indicates that the domain is not in the aligned region.

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