DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment verm and Cda5

DIOPT Version :10

Sequence 1:NP_001163469.1 Gene:verm / 40149 FlyBaseID:FBgn0261341 Length:555 Species:Drosophila melanogaster
Sequence 2:NP_722590.2 Gene:Cda5 / 33158 FlyBaseID:FBgn0051973 Length:1998 Species:Drosophila melanogaster


Alignment Length:433 Identity:147/433 - (33%)
Similarity:230/433 - (53%) Gaps:40/433 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   119 DVLEKPRKAKPILKTDEPICPEGKLSCGDGECLDKELFCNGKSDCKDESDENACSVDEDP---NR 180
            ||:..|.:.....:|...:.|.|.:.....|.:|...:...:.|          .:...|   ..
  Fly  1579 DVISTPNRGTHPPRTRPTLKPSGTIVSKAQEFVDIYRYPPSRPD----------PIYPQPMPDKT 1633

  Fly   181 APECDPTQCALPDCFCSADGTRIPGGIEPQQVPQMITITFNGAVNVDNIDLYEDIFNGQRQNPNG 245
            |.:|....|.||||:|.  |..|||.:..:.:||::.:||:.:||..|..||.|:|...|.||||
  Fly  1634 AAKCRKDVCLLPDCYCG--GRDIPGELPVESIPQIVLLTFDDSVNDLNKQLYTDLFEKGRVNPNG 1696

  Fly   246 CSIKGTFFVSHKYTNYSAVQDLHRRGHEISVFSLTHKDDPNYWTGGSYDDWLAEMAGSRLIVERF 310
            |.|..||:|||::|:||.||:|:..|||::..:::|.....:    |...|..|:||.|.|:..:
  Fly  1697 CPITATFYVSHEWTDYSQVQNLYADGHEMASHTVSHSFGEQF----SQKKWTREIAGQREILAAY 1757

  Fly   311 ANITDGSIIGMRAPYLRVGGNKQFEMMADQFFVYDASITASLGRVPIWPYTLYFRMPHKCNGNAH 375
            ..:....:.|||||:|.|||||.::|:.|..|.||:|:.....|.|.|||||.:::.|.|  ...
  Fly  1758 GGVKMSDVRGMRAPFLSVGGNKMYKMLYDSNFTYDSSMPVYENRPPSWPYTLDYKIFHDC--MIP 1820

  Fly   376 NCPSRSHP-VWEMVMNELDRRDDPTFDESLPG--CHMVDSCSNVASGDQFARLLRHNFNRHYNSN 437
            .||:||:| ||::.|         ...:.|.|  |.|.|:|||.:..|...:::..||.|||.:|
  Fly  1821 PCPTRSYPGVWQVPM---------VMWQDLNGGRCSMGDACSNPSDADGVTKMIMKNFERHYTTN 1876

  Fly   438 RAPLGLHFHASWLKSKKEYRDELIKFIEEMLGRNDVFFVTNLQVIQWMQNPTELNSLRDFQEWKE 502
            |||.||.:||:|. ::..:::..|||::.:....||:.:||.|.:||:::||.::.:..||.:  
  Fly  1877 RAPFGLFYHAAWF-TQPHHKEGFIKFLDAINAMQDVWIITNWQALQWVRDPTPISRINSFQPF-- 1938

  Fly   503 KCDVKGQP-YCSLPNACPLTTRELPGETLRLFTCMECPNNYPW 544
            :||...:| .|:.|..|.|..:   .....:.||..||:.|||
  Fly  1939 QCDYSDRPKRCNNPKVCNLWHK---SGVRYMKTCQPCPDIYPW 1978

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vermNP_001163469.1 CBM_14 57..118 CDD:426342
LDLa 138..172 CDD:238060 5/33 (15%)
CE4_CDA_like_1 213..488 CDD:200596 107/277 (39%)
Cda5NP_722590.2 CBM_14 58..106 CDD:426342
CE4_CDA_like_2 1664..1926 CDD:200597 107/277 (39%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.